View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_19 (Length: 428)
Name: NF20721_low_19
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 24950645 - 24950242
Alignment:
| Q |
13 |
tgaatggaggttgttactgacaatgtttatgatcggcgatgggacgatccttatgtacgtcacacgcatgacggtctattaaagtggaaatatgctactc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |
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| T |
24950645 |
tgaatggaggttgttactgacaatgtttatgatcggcgatgggacgatccttatgtacgttgcacgcatgaaggtctcttaaagtggaaatatgctactc |
24950546 |
T |
|
| Q |
113 |
tgaattcagttgattttctctttgaggtgatatttttcaacttatacacatgttattggatatttctcattccacttatcatttggtcacttctagtttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24950545 |
tgaattcagttgattttctctttgaggtgatatttttcaacttatacacatgttattggatatttctcattccacttatcatttggtcactcctagtttg |
24950446 |
T |
|
| Q |
213 |
ttgccaatgcatccaactaatatctagttgtttgtgtttgacagattgttgatgatcgtcgcctactttttctctatgaacgtggacaaaagaaacccat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24950445 |
ttgccaatgcatccaactaatatctagttgtttgtgtttgacagattgttgatgatcgtcgcctactttttatctatgaacgtggacaaaagaaacccat |
24950346 |
T |
|
| Q |
313 |
ggaagggtttattgttgcattcgaaggtcatgaagannnnnnnnagcagtataacc---aatttctagacataccagaaaatgtatgggaataggcatct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24950345 |
ggaagggtttattgttgcattcgaaggtcatgaagattttttttagcagtatagccaataatttctagacataccagaaaatgtatgggaataggcatct |
24950246 |
T |
|
| Q |
410 |
aagt |
413 |
Q |
| |
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|||| |
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| T |
24950245 |
aagt |
24950242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 24368276 - 24367941
Alignment:
| Q |
13 |
tgaatggaggttgttactgacaatgtttatgatcggcgatgggacgatccttatgtacgtcacacgcatgacggtctattaaagtggaaatatgctactc |
112 |
Q |
| |
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||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| || || ||||| ||||| |||||||||||||||||| ||| |
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| T |
24368276 |
tgaatggaggttgttgctgacaatgtttatgatcagggatgggacgatccttatgtacctcgtactcatgaaggtctcttaaagtggaaatatgctgctc |
24368177 |
T |
|
| Q |
113 |
tgaattcagttgattttctctttgaggtgatatttttcaactta-tacacatgttattggatatttctcattccacttatcatttggtcacttctagttt |
211 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24368176 |
taaattcagttgattttctctttgaggtgatattttttaacttattacgcatgtcattgaatatttctcattccacttatcatttggtcacttctagttt |
24368077 |
T |
|
| Q |
212 |
gttgccaatgcatccaactaatatctagttgtttgtgtttgacagattgttgatgatcgtcgcctactttttctctatgaacgtggacaaaagaaaccca |
311 |
Q |
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|||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| || |
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| T |
24368076 |
gttgccgatgcatccaactaatatc-agctgtttgtgtttgacagattgttgatgatcgccggctactttttctctatgaacgtggaaaaaagaaactca |
24367978 |
T |
|
| Q |
312 |
tggaagggtttattgttgcattcgaaggtcatgaaga |
348 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
24367977 |
tggaagggtttattgttgcattcgaaggtcaggaaga |
24367941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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