View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_low_23 (Length: 402)

Name: NF20721_low_23
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_low_23
NF20721_low_23
[»] chr2 (4 HSPs)
chr2 (26-204)||(45074883-45075061)
chr2 (267-388)||(3925578-3925699)
chr2 (267-355)||(36636915-36637003)
chr2 (269-355)||(5098718-5098804)
[»] chr8 (3 HSPs)
chr8 (267-388)||(18022053-18022174)
chr8 (267-305)||(1150051-1150089)
chr8 (266-334)||(15227029-15227097)
[»] chr3 (6 HSPs)
chr3 (267-388)||(9180036-9180157)
chr3 (265-305)||(30947939-30947979)
chr3 (267-334)||(9106267-9106334)
chr3 (270-313)||(41192370-41192413)
chr3 (268-305)||(33414041-33414078)
chr3 (257-305)||(19284661-19284709)
[»] chr4 (6 HSPs)
chr4 (272-388)||(54751602-54751718)
chr4 (267-334)||(55765481-55765548)
chr4 (267-305)||(10472497-10472535)
chr4 (267-305)||(13635753-13635791)
chr4 (267-305)||(49492540-49492578)
chr4 (266-334)||(25574127-25574195)
[»] chr5 (4 HSPs)
chr5 (272-386)||(30411027-30411141)
chr5 (267-355)||(33868155-33868243)
chr5 (267-305)||(3884063-3884101)
chr5 (267-305)||(30783435-30783473)
[»] chr1 (4 HSPs)
chr1 (265-305)||(50351801-50351841)
chr1 (267-305)||(49936965-49937003)
chr1 (266-334)||(11421593-11421661)
chr1 (265-305)||(24635924-24635964)
[»] chr6 (1 HSPs)
chr6 (266-305)||(31216661-31216700)
[»] chr7 (3 HSPs)
chr7 (267-305)||(16933272-16933310)
chr7 (267-305)||(16938655-16938693)
chr7 (266-355)||(44141229-44141318)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 45074883 - 45075061
Alignment:
Q  26 cttataattgctacaatatatactcacatacacgttggcagcaacaatagaaactcaagtaaccaaaataatcattaaaatgaccaagtaaatctctaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45074883 cttataattgctacaatatatactcacatacacgttggcagcaacaatagaaactcaagtaaccaaaatcatcattaaaatgaccaagtaaatctctaaa 45074982  T
Q  126 taatgtagcaataagcaattatgtaagtaatacattaacataacttgccagtgtgatctcactatagcctaaacaaatg 204  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45074983 taatgcagcaataggcaattatgtaagtaatacattaacataacttgctagtgtgatctcactatagcctaaacaaatg 45075061  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 267 - 388
Target Start/End: Original strand, 3925578 - 3925699
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac 366  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3925578 ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcggctcacac 3925677  T
Q  367 tccccttcacatctcatactct 388  Q
    || |||||||||||||||||||    
T  3925678 tctccttcacatctcatactct 3925699  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 36637003 - 36636915
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc 355  Q
    ||||||||||||  |||||||||| ||  |||||| ||||||||||| | |||  ||||| ||||||| ||||||||||||||||||||    
T  36637003 ggcaaaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttgttttacacgtgtaataatc 36636915  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 5098718 - 5098804
Alignment:
Q  269 caaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc 355  Q
    ||||||||||  |||||||||| || ||||||||||||| ||||| | |||  ||||| ||| |||  || ||||||||||||||||    
T  5098718 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaatttattgtacacgtgtaataatc 5098804  T

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Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 267 - 388
Target Start/End: Original strand, 18022053 - 18022174
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac 366  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18022053 ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac 18022152  T
Q  367 tccccttcacatctcatactct 388  Q
    || |||||||||||||||||||    
T  18022153 tctccttcacatctcatactct 18022174  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 1150089 - 1150051
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  1150089 ggcaaaagttatggtgcataagttattcccttatgcacc 1150051  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 15227029 - 15227097
Alignment:
Q  266 cggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt 334  Q
    ||||||||||||||||||||||||  || ||||||||||| | ||||| | | || ||||| |||||||    
T  15227029 cggcaaaagttatggtgcataagttatttccttatgcaccgtgcataaacacattacaaccatcagatt 15227097  T

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Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 9180157 - 9180036
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac 366  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9180157 ggcaaaagttatggtgcataagtccttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacac 9180058  T
Q  367 tccccttcacatctcatactct 388  Q
    || |||||||||||||||||||    
T  9180057 tctccttcacatctcatactct 9180036  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 30947979 - 30947939
Alignment:
Q  265 gcggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  30947979 gcggcaaaagttatggtgcataagtcatttccttatgcacc 30947939  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 9106267 - 9106334
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt 334  Q
    |||||||||||||||||||||||| || ||||||||||| | ||||| | | || ||||| |||||||    
T  9106267 ggcaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagatt 9106334  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 41192413 - 41192370
Alignment:
Q  270 aaaagttatggtgcataagtccttcccttatgcaccctacataa 313  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  41192413 aaaagttatggtgcataagtcatttccttatgcaccgtacataa 41192370  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 33414078 - 33414041
Alignment:
Q  268 gcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    ||||||||||||||||||||||| || |||||||||||    
T  33414078 gcaaaagttatggtgcataagtcatttccttatgcacc 33414041  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 19284661 - 19284709
Alignment:
Q  257 ttcaaattgcggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||  ||||||||||||||||||||||||  || |||||||||||    
T  19284661 ttcaaatcacggcaaaagttatggtgcataagttatttccttatgcacc 19284709  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 272 - 388
Target Start/End: Original strand, 54751602 - 54751718
Alignment:
Q  272 aagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactcccc 371  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54751602 aagttatggtgcataagtgcttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc 54751701  T
Q  372 ttcacatctcatactct 388  Q
    |||||||||||||||||    
T  54751702 ttcacatctcatactct 54751718  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 55765481 - 55765548
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt 334  Q
    |||||||||||||||||||||||| || ||||||||||| | ||||| | | || ||||| |||||||    
T  55765481 ggcaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagatt 55765548  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 10472497 - 10472535
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  10472497 ggcaaaagttatggtgcataagtcatttccttatgcacc 10472535  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 13635791 - 13635753
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  13635791 ggcaaaagttatggtgcataagtcatttccttatgcacc 13635753  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 49492578 - 49492540
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  49492578 ggcaaaagttatggtgcataagtcatttccttatgcacc 49492540  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 25574195 - 25574127
Alignment:
Q  266 cggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt 334  Q
    |||||||||||||  |||||||||| || ||||||||||||| ||||| | |||  ||||| |||||||    
T  25574195 cggcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatt 25574127  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 30411141 - 30411027
Alignment:
Q  272 aagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactcccc 371  Q
    |||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30411141 aagttatggtgcataagggtttcccttatgcaccctgcataagctcttttcaaccttcagattggttttacacgtgtaataatctcagctcacactctcc 30411042  T
Q  372 ttcacatctcatact 386  Q
    |||||||||||||||    
T  30411041 ttcacatctcatact 30411027  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 33868155 - 33868243
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc 355  Q
    ||||||||||||  |||||||||| || ||||||||||||| ||||| | |||  ||||| || ||||  ||||||| |||||||||||    
T  33868155 ggcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgatttattttacatgtgtaataatc 33868243  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 3884101 - 3884063
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  3884101 ggcaaaagttatggtgcataagtcatttccttatgcacc 3884063  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 30783435 - 30783473
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  30783435 ggcaaaagttatggtgcataagtcatttccttatgcacc 30783473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 50351801 - 50351841
Alignment:
Q  265 gcggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  50351801 gcggcaaaagttatggtgcataagtcatttccttatgcacc 50351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 49937003 - 49936965
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  49937003 ggcaaaagttatggtgcataagtcatttccttatgcacc 49936965  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 11421593 - 11421661
Alignment:
Q  266 cggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagatt 334  Q
    |||||||||||||||||||||| || || ||||||||||| | ||||| | |||  ||||| |||||||    
T  11421593 cggcaaaagttatggtgcataaatcatttccttatgcaccgtgcataaacacttcacaaccatcagatt 11421661  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 24635924 - 24635964
Alignment:
Q  265 gcggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||||  || |||||||||||    
T  24635924 gcggcaaaagttatggtgcataagttatttccttatgcacc 24635964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 31216661 - 31216700
Alignment:
Q  266 cggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  31216661 cggcaaaagttatggtgcataagtcatttccttatgcacc 31216700  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 16933310 - 16933272
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  16933310 ggcaaaagttatggtgcataagtcatttccttatgcacc 16933272  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 16938693 - 16938655
Alignment:
Q  267 ggcaaaagttatggtgcataagtccttcccttatgcacc 305  Q
    |||||||||||||||||||||||| || |||||||||||    
T  16938693 ggcaaaagttatggtgcataagtcatttccttatgcacc 16938655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 44141318 - 44141229
Alignment:
Q  266 cggcaaaagttatggtgcataagtccttcccttatgcaccctacataagctcttttcaaccttcagattggttttacacgtgtaataatc 355  Q
    |||||||||||||  |||||||||| || ||||||||||||| ||||| | |||  ||||| || ||||   | ||||||||||||||||    
T  44141318 cggcaaaagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgatttagtgtacacgtgtaataatc 44141229  T

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