View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_low_24 (Length: 388)

Name: NF20721_low_24
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_low_24
NF20721_low_24
[»] chr6 (8 HSPs)
chr6 (10-268)||(2842550-2842808)
chr6 (10-268)||(2832812-2833070)
chr6 (21-265)||(2829147-2829391)
chr6 (10-267)||(2860076-2860333)
chr6 (10-267)||(2909519-2909775)
chr6 (10-264)||(2865461-2865715)
chr6 (10-264)||(2884651-2884905)
chr6 (26-264)||(14578259-14578497)
[»] chr7 (1 HSPs)
chr7 (84-268)||(1801136-1801320)
[»] chr4 (2 HSPs)
chr4 (107-246)||(44396419-44396558)
chr4 (95-168)||(6318517-6318590)
[»] chr1 (2 HSPs)
chr1 (221-266)||(6968668-6968713)
chr1 (217-249)||(2177976-2178008)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 2842808 - 2842550
Alignment:
Q  10 attattctctcccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 109  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2842808 attagtctcttccaacaacttttcaataattggaaataaatcatcatgaaactcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 2842709  T
Q  110 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2842708 caataagacatttctatatgcttatccattcttcctctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 2842609  T
Q  210 atccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttacctta 268  Q
    ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  2842608 atccacatgctgaccaaattccatcaataaaattcaacaaacccgaaagagttacctta 2842550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 2832812 - 2833070
Alignment:
Q  10 attattctctcccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 109  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  2832812 attagtctctcccaacaacttttcaataattggaaacaaatcatcatgagtctcaacatctaagtagtttcttgcaagaaccttgaaagcttgatagcta 2832911  T
Q  110 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  2832912 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttgtccacaaaatttgttgtgaaaattattatcctctctg 2833011  T
Q  210 atccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttacctta 268  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833012 atccacatgctgaccaaattccatcaatgaaattcaacaaaccagaaagagttacctta 2833070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 2829391 - 2829147
Alignment:
Q  21 ccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagctacaataagacat 120  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||||  | |||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  2829391 ccaacaatttttcaataattggaaataaatcatcatgagactcaacatcccaatagttctttgcaagcaccttgaaagcttgatagctacaataagacat 2829292  T
Q  121 ttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctgatccacaagct 220  Q
    |||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||| ||     
T  2829291 ttctatatgcttatccatccttcccctcctaattagggcaggatcaagtttgtccacaaaatttgttgtgaaaattatgatcctctctcctccacatgca 2829192  T
Q  221 gaccaaattccatcaatgaaattcaacaaaccagaaagagttacc 265  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  2829191 gaccaaatcccatcaataaaattcaacaaaccagaaagagttacc 2829147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 2860076 - 2860333
Alignment:
Q  10 attattctctcccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||  ||||||| |||||||| ||||||||  | ||||||||||| || ||||||||||||    
T  2860076 attagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaacgcttgatagcta 2860175  T
Q  110 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 209  Q
    ||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||  |||     
T  2860176 caataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctc 2860275  T
Q  210 atccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttacctt 267  Q
     |||||| | ||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  2860276 ctccacatgatgaccaaattccatcaatagaattcaacaaacccgaaagagttacctt 2860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 2909519 - 2909775
Alignment:
Q  10 attattctctcccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 109  Q
    |||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||  ||||||| | ||| ||  |||||||||||    
T  2909519 attagtctctcccaacaacttttcaataattggaaacaaatcatcatgagactcaacatctaagtagttctttgcaagcatcttgaacacttgatagcta 2909618  T
Q  110 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 209  Q
    ||||| |||||||| || ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||     
T  2909619 caataggacatttcaatgtgcatatccatccttcccctccttataagagcaggatcaagtttgtccacaaaattagttgtg-aaattatgatcctttctc 2909717  T
Q  210 atccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttacctt 267  Q
     |||||| | |||||||||||||||||| |||||||||||||| ||| | ||||||||    
T  2909718 ctccacatgttgaccaaattccatcaataaaattcaacaaacccgaatgtgttacctt 2909775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 2865461 - 2865715
Alignment:
Q  10 attattctctcccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||  ||||||| |||||||| ||||||||  | ||||||||||| || |||||||| |||    
T  2865461 attagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaatgcttgatatcta 2865560  T
Q  110 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 209  Q
    ||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||  |||     
T  2865561 caataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctc 2865660  T
Q  210 atccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttac 264  Q
     |||||| | ||||||||||||||||||  ||||||||||||| |||||||||||    
T  2865661 ctccacatgatgaccaaattccatcaatagaattcaacaaacccgaaagagttac 2865715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 2884651 - 2884905
Alignment:
Q  10 attattctctcccaacaacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagcta 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||  ||||||| |||||||| ||||||||  | ||||||||||| || |||||||| |||    
T  2884651 attagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaacgcttgatatcta 2884750  T
Q  110 caataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctg 209  Q
    ||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||  |||     
T  2884751 caataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctc 2884850  T
Q  210 atccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttac 264  Q
     |||||| | ||||||||||||||||||  ||||||||||||| |||||||||||    
T  2884851 ctccacatgatgaccaaattccatcaatagaattcaacaaacccgaaagagttac 2884905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 14578497 - 14578259
Alignment:
Q  26 aacttttcaataattggaaataaatcttcatgagattcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagctacaataagacatttcta 125  Q
    |||||||||||||||||||| ||| | |||||||| ||||||||  | || ||  ||||||| || || || |||| |||||||||||| |||||||| |    
T  14578497 aacttttcaataattggaaacaaaccatcatgagactcaacatcccaataattctttgcaagcactttgaatgcttcatagctacaatatgacatttcaa 14578398  T
Q  126 tatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctgatccacaagctgacca 225  Q
    ||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||  |||||| || |||||    
T  14578397 tatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggttgtgaaaattatgatcctttctcctccacatgccgacca 14578298  T
Q  226 aattccatcaatgaaattcaacaaaccagaaagagttac 264  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  14578297 aattccatcgataaaattcaacaaaccagaaagagttac 14578259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 1801320 - 1801136
Alignment:
Q  84 caagaaccttaaaagcttgatagctacaataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaatt 183  Q
    |||||||||||||||||| | | | ||||||||| |  || |  || |||||||| |||||  |||| |||||||| ||||||||||| |||||||||||    
T  1801320 caagaaccttaaaagcttcaaaacaacaataagataactcaacgtgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaatt 1801221  T
Q  184 agttgtgaaaattatgatcctctctgatccacaagctgaccaaattccatcaatgaaattcaacaaaccagaaagagttacctta 268  Q
     || ||||||||||| ||||||||   |||||| || ||||||||||||||||| |||||||| |||||||| | ||||||||||    
T  1801220 cgtcgtgaaaattataatcctctcccctccacacgcggaccaaattccatcaataaaattcaataaaccagataaagttacctta 1801136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 44396558 - 44396419
Alignment:
Q  107 ctacaataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctct 206  Q
    ||||||||||| | ||| ||||| || |||||||| |||||||||||||| ||||||||||| || |||||| |||| ||||||||||  || | ||| |    
T  44396558 ctacaataagaaagttcaatatgtttgtccattctacccctccttataagtgcaggatcaagcttctccacataatttgttgtgaaaacaattaaccttt 44396459  T
Q  207 ctgatccacaagctgaccaaattccatcaatgaaattcaa 246  Q
    |   ||||||||||||||| || |||||||||||||||||    
T  44396458 cacctccacaagctgaccatataccatcaatgaaattcaa 44396419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 6318590 - 6318517
Alignment:
Q  95 aaagcttgatagctacaataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaag 168  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||||||||||||    
T  6318590 aaagcttgatagctacaataagacatttctatgttcttatccatccttcccctcctgatgagagcaggatcaag 6318517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 6968713 - 6968668
Alignment:
Q  221 gaccaaattccatcaatgaaattcaacaaaccagaaagagttacct 266  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||    
T  6968713 gaccaaatcccatcaatgaaattcaacaatccagaaagtgttacct 6968668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 2178008 - 2177976
Alignment:
Q  217 agctgaccaaattccatcaatgaaattcaacaa 249  Q
    |||||||||||| ||||||||||||||||||||    
T  2178008 agctgaccaaatcccatcaatgaaattcaacaa 2177976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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