View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_27 (Length: 352)
Name: NF20721_low_27
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 27083736 - 27084060
Alignment:
| Q |
17 |
aagaatatctgtaattacatcattatcaccataaggtcaaagtgaatgaaagactatgtaatccttcaaagaaagaaatcccaatccaatggaaaggcct |
116 |
Q |
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| T |
27083736 |
aagaatatctgtaattacatcattatcaccataaggtcaaagtgaatgaaagactatgtaatccttcaaagaaagaaatcccaatccaatggaaaggcct |
27083835 |
T |
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| Q |
117 |
agaagcttctattgatgagtcacccaatttcagttattgtaagaatcacattcagcttctgagtagcaatatccatgattccattgtaaccaatttagct |
216 |
Q |
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| T |
27083836 |
agaagcttctattgatgagtcacccaatttcagttatggtaagaatcacattcagcttctgagtagcaatatccatgattccactgtaaccaatttagct |
27083935 |
T |
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| Q |
217 |
atatatgtacttgagtgatgaattaataataagatatgattattaatgaaagctagtagtagaaatatcttagattctctctttattgcggcggtattct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083936 |
atatatgtacttgagtgatgaattaataataagatatgattattaatgaaagctagtagtagaaatatcttagattctctctttattgcggcggtattct |
27084035 |
T |
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| Q |
317 |
tcaaccttgtcttcagagctttcat |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
27084036 |
tcaaccttgtcttcagagctttcat |
27084060 |
T |
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