View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_low_29 (Length: 349)
Name: NF20721_low_29
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 41101493 - 41101825
Alignment:
| Q |
1 |
tgaaatcgagttttcttcgtattgaagtatatctcatgcaacaaggtgaacctaaattaaaccaactataaaacagtaataacataaatgcaagaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41101493 |
tgaaatcgagttttcttcgtattgaagtatatctcatgcaacaaggtgaacctaaattaaaccaactataaaacagtaataacataaatgcaagaaattt |
41101592 |
T |
|
| Q |
101 |
gttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatgagatgttgaaaagggattttagtagtgcttttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
41101593 |
gttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatgagatgctgaaaagggattttggtagtgcttttttc |
41101692 |
T |
|
| Q |
201 |
aatgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtatgaggaaacaagaacaaacatattccaggataaaatcacaattgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41101693 |
aatgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtttgaggaaacaagaacaaacatattccaggataaaatcacaattgaa |
41101792 |
T |
|
| Q |
301 |
gttgatatgtttggaacgttcttggcaagttgg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41101793 |
gttgatatgtttggaacgttcttggcaagttgg |
41101825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 328
Target Start/End: Original strand, 41091393 - 41091718
Alignment:
| Q |
3 |
aaatcgagttttcttcgtattgaagtatatctcatgcaacaaggtgaacctaaattaaaccaactataaaacagtaataacataaatgcaagaaatttgt |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
41091393 |
aaatagagttttcttcgtattgaagtatatctcatgtaacaaggagaacctcaattaaactaactataaaacagtgataacataaatgcaacaaatttgt |
41091492 |
T |
|
| Q |
103 |
tatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatgagatgttgaaaagggattttag-tagtgcttttttca |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| |||| | ||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
41091493 |
tatattcaatatccccctctcaagttggaagatata-tgtttgaaatccccaacttggaaatgagatgcagaatagggattttaggtagtgcttttttca |
41091591 |
T |
|
| Q |
202 |
atgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtatgaggaaacaagaacaaacatattccaggataaaatcacaattgaag |
301 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
41091592 |
atgggtcagctagttgatgtttggagttgttatgatatgattgtgaacaagtttgaggaaactagaacaaacatattcccggataaaatcacaatcgaag |
41091691 |
T |
|
| Q |
302 |
ttgatatgtttggaacgttcttggcaa |
328 |
Q |
| |
|
| |||||||||| |||||||||||||| |
|
|
| T |
41091692 |
tcgatatgtttgtaacgttcttggcaa |
41091718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 67 - 330
Target Start/End: Original strand, 41080108 - 41080365
Alignment:
| Q |
67 |
tataaaacagtaataacataaatgcaagaaatttgttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatga |
166 |
Q |
| |
|
||||||||||| | ||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||| |||| ||||||||||| |||||| |||||||| |
|
|
| T |
41080108 |
tataaaacagttagaacataaatgcaacaaatatgttatattaaatatcc-cctcttaagttggaagatata-tgttcaatatccccaactaggaaatga |
41080205 |
T |
|
| Q |
167 |
gatgttgaaaagggatttta-gtagtgcttttttcaatgggtaagctagttgatgtttggagctgatatgatatgattgtgaacaagtatgaggaaacaa |
265 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||||||| |||||||| |||| ||||||| |||| |||||| |||||| | ||||||||| | |
|
|
| T |
41080206 |
gatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagttcatgtctggagct--tatg---tgattgcgaacaaatttgaggaaacta |
41080300 |
T |
|
| Q |
266 |
gaacaaacatattccaggataaaatcacaattgaagttgatatgtttggaacgttcttggcaagt |
330 |
Q |
| |
|
||||||||||||| ||||||||| ||||| | || |||||||||||||| |||||||||||| |
|
|
| T |
41080301 |
gaacaaacatatttttggataaaatgacaatcaatgtcgatatgtttggaacattcttggcaagt |
41080365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University