View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_low_31 (Length: 344)

Name: NF20721_low_31
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_low_31
NF20721_low_31
[»] chr1 (23 HSPs)
chr1 (133-307)||(33101506-33101680)
chr1 (174-307)||(22414734-22414867)
chr1 (133-320)||(5459694-5459881)
chr1 (218-329)||(5671773-5671885)
chr1 (157-307)||(34273029-34273179)
chr1 (183-307)||(16050362-16050486)
chr1 (162-321)||(43344430-43344586)
chr1 (205-307)||(26977730-26977832)
chr1 (177-307)||(16030357-16030487)
chr1 (181-293)||(23728833-23728944)
chr1 (205-307)||(12177376-12177478)
chr1 (205-293)||(25408086-25408174)
chr1 (205-295)||(23280273-23280361)
chr1 (205-307)||(52565570-52565672)
chr1 (224-293)||(1659802-1659871)
chr1 (147-330)||(18246075-18246258)
chr1 (183-281)||(14255055-14255153)
chr1 (172-281)||(48637507-48637617)
chr1 (183-280)||(4601513-4601610)
chr1 (258-321)||(12032237-12032300)
chr1 (242-289)||(16299591-16299638)
chr1 (205-262)||(3590817-3590874)
chr1 (235-307)||(2612663-2612734)
[»] chr4 (18 HSPs)
chr4 (206-321)||(47253268-47253384)
chr4 (131-307)||(19809618-19809793)
chr4 (174-299)||(10981825-10981949)
chr4 (181-299)||(12683751-12683869)
chr4 (176-293)||(15742166-15742283)
chr4 (209-293)||(15514574-15514658)
chr4 (236-307)||(19643723-19643794)
chr4 (215-312)||(16012465-16012562)
chr4 (205-313)||(29157092-29157201)
chr4 (215-292)||(14602029-14602106)
chr4 (138-269)||(3981873-3982002)
chr4 (183-293)||(5518508-5518618)
chr4 (205-307)||(2674573-2674671)
chr4 (205-270)||(13171069-13171134)
chr4 (172-305)||(19818651-19818783)
chr4 (147-307)||(26894721-26894880)
chr4 (276-321)||(40979055-40979101)
chr4 (236-297)||(14003073-14003134)
[»] chr2 (21 HSPs)
chr2 (138-321)||(45714918-45715102)
chr2 (181-307)||(36267464-36267590)
chr2 (138-326)||(27846498-27846687)
chr2 (143-299)||(12127670-12127826)
chr2 (173-307)||(3586321-3586455)
chr2 (143-307)||(19919065-19919229)
chr2 (138-307)||(45258151-45258320)
chr2 (205-307)||(12168962-12169065)
chr2 (186-293)||(18135842-18135949)
chr2 (175-306)||(36022421-36022551)
chr2 (224-299)||(24499798-24499873)
chr2 (205-307)||(20120337-20120439)
chr2 (236-293)||(19050448-19050505)
chr2 (215-291)||(15825154-15825230)
chr2 (218-293)||(18770317-18770392)
chr2 (236-293)||(29137922-29137979)
chr2 (206-293)||(29711009-29711094)
chr2 (188-294)||(10923177-10923283)
chr2 (205-291)||(24157321-24157407)
chr2 (236-293)||(15390598-15390655)
chr2 (205-249)||(12634836-12634880)
[»] chr5 (18 HSPs)
chr5 (138-321)||(8938833-8939018)
chr5 (138-307)||(22903016-22903185)
chr5 (157-307)||(20025225-20025375)
chr5 (189-293)||(22865735-22865839)
chr5 (225-293)||(24647298-24647366)
chr5 (187-321)||(27083222-27083356)
chr5 (187-293)||(25537377-25537483)
chr5 (205-307)||(32418485-32418587)
chr5 (205-318)||(30827060-30827172)
chr5 (175-299)||(7449752-7449875)
chr5 (236-304)||(26994608-26994676)
chr5 (205-299)||(25333725-25333819)
chr5 (170-271)||(16621163-16621264)
chr5 (243-293)||(25829001-25829051)
chr5 (205-271)||(26163625-26163691)
chr5 (173-250)||(4477156-4477233)
chr5 (145-289)||(19993182-19993326)
chr5 (205-281)||(26348104-26348180)
[»] chr8 (18 HSPs)
chr8 (133-329)||(13754676-13754873)
chr8 (206-299)||(18322934-18323027)
chr8 (133-299)||(17927711-17927877)
chr8 (133-306)||(26916898-26917071)
chr8 (205-291)||(24576598-24576684)
chr8 (133-307)||(30477559-30477733)
chr8 (242-307)||(6928089-6928154)
chr8 (205-312)||(3459477-3459585)
chr8 (174-307)||(15057994-15058127)
chr8 (14-62)||(1911191-1911239)
chr8 (187-321)||(13764961-13765096)
chr8 (187-272)||(1909742-1909827)
chr8 (172-273)||(23269203-23269304)
chr8 (228-299)||(24070865-24070936)
chr8 (205-307)||(24507447-24507549)
chr8 (242-295)||(17698296-17698349)
chr8 (236-296)||(21416759-21416819)
chr8 (215-290)||(24677603-24677678)
[»] scaffold0002 (2 HSPs)
scaffold0002 (173-293)||(379674-379794)
scaffold0002 (242-293)||(121024-121075)
[»] chr6 (36 HSPs)
chr6 (201-293)||(19730604-19730696)
chr6 (174-316)||(3404851-3404994)
chr6 (205-299)||(25008398-25008491)
chr6 (207-321)||(15480325-15480440)
chr6 (133-288)||(34187217-34187372)
chr6 (173-299)||(18147264-18147390)
chr6 (218-307)||(19305467-19305556)
chr6 (177-293)||(16343541-16343657)
chr6 (205-293)||(31295548-31295636)
chr6 (185-293)||(34064165-34064273)
chr6 (205-307)||(9292019-9292120)
chr6 (184-293)||(12449596-12449705)
chr6 (225-321)||(34572978-34573075)
chr6 (206-293)||(27860961-27861048)
chr6 (184-307)||(30680961-30681084)
chr6 (205-307)||(9277300-9277401)
chr6 (175-293)||(12488009-12488127)
chr6 (242-307)||(689856-689921)
chr6 (236-293)||(9403193-9403250)
chr6 (224-321)||(14268440-14268539)
chr6 (217-307)||(4251043-4251133)
chr6 (205-299)||(14080474-14080567)
chr6 (247-293)||(19277089-19277135)
chr6 (205-305)||(20148307-20148405)
chr6 (205-305)||(22184423-22184521)
chr6 (242-320)||(10115670-10115749)
chr6 (162-304)||(10926896-10927038)
chr6 (242-296)||(17380124-17380178)
chr6 (242-307)||(11087529-11087594)
chr6 (242-307)||(16130995-16131060)
chr6 (183-292)||(22497312-22497421)
chr6 (206-307)||(22572036-22572136)
chr6 (217-293)||(23768195-23768271)
chr6 (249-307)||(31423836-31423894)
chr6 (261-321)||(12203622-12203683)
chr6 (187-267)||(19331719-19331799)
[»] scaffold0205 (2 HSPs)
scaffold0205 (183-293)||(22854-22964)
scaffold0205 (206-293)||(10928-11015)
[»] chr7 (19 HSPs)
chr7 (205-307)||(9135360-9135462)
chr7 (187-307)||(9867938-9868058)
chr7 (205-298)||(7486535-7486628)
chr7 (172-293)||(16987105-16987226)
chr7 (205-298)||(39879377-39879470)
chr7 (131-299)||(21161158-21161325)
chr7 (173-307)||(5863145-5863279)
chr7 (183-293)||(13292136-13292246)
chr7 (181-295)||(12644751-12644866)
chr7 (205-307)||(26762910-26763012)
chr7 (206-293)||(10287609-10287696)
chr7 (205-307)||(29373436-29373538)
chr7 (209-321)||(9573411-9573523)
chr7 (205-292)||(5925489-5925576)
chr7 (215-293)||(34854243-34854321)
chr7 (229-293)||(5929024-5929088)
chr7 (147-220)||(25173832-25173905)
chr7 (205-292)||(1979052-1979139)
chr7 (205-292)||(18773971-18774058)
[»] chr3 (21 HSPs)
chr3 (183-293)||(12251956-12252066)
chr3 (174-307)||(9801083-9801215)
chr3 (218-304)||(17143751-17143837)
chr3 (243-307)||(28715487-28715551)
chr3 (188-299)||(21342294-21342405)
chr3 (218-307)||(30606931-30607020)
chr3 (205-293)||(12516175-12516263)
chr3 (173-307)||(8122914-8123047)
chr3 (235-307)||(16704422-16704494)
chr3 (148-250)||(6129379-6129481)
chr3 (181-271)||(12108385-12108475)
chr3 (129-307)||(28723773-28723951)
chr3 (244-293)||(12731574-12731623)
chr3 (205-293)||(1770815-1770903)
chr3 (245-293)||(9781519-9781567)
chr3 (245-293)||(14860112-14860160)
chr3 (177-273)||(21649375-21649471)
chr3 (186-295)||(431327-431436)
chr3 (143-307)||(2311833-2311997)
chr3 (215-306)||(13085073-13085164)
chr3 (242-278)||(25495965-25496001)
[»] scaffold0505 (1 HSPs)
scaffold0505 (175-299)||(7845-7969)
[»] scaffold0294 (1 HSPs)
scaffold0294 (236-293)||(256-313)
[»] scaffold0360 (1 HSPs)
scaffold0360 (205-307)||(13912-14014)
[»] scaffold0023 (1 HSPs)
scaffold0023 (206-299)||(95817-95910)
[»] scaffold0005 (1 HSPs)
scaffold0005 (215-292)||(215272-215349)
[»] scaffold0291 (2 HSPs)
scaffold0291 (243-307)||(15429-15493)
scaffold0291 (236-299)||(8584-8647)
[»] scaffold0103 (1 HSPs)
scaffold0103 (205-293)||(40786-40874)
[»] scaffold0174 (1 HSPs)
scaffold0174 (184-298)||(29286-29398)
[»] scaffold0054 (1 HSPs)
scaffold0054 (214-307)||(68801-68892)
[»] scaffold0380 (1 HSPs)
scaffold0380 (236-293)||(6873-6930)
[»] scaffold0140 (1 HSPs)
scaffold0140 (206-306)||(6289-6389)
[»] scaffold0074 (1 HSPs)
scaffold0074 (205-298)||(35243-35337)
[»] scaffold0057 (1 HSPs)
scaffold0057 (206-299)||(73809-73902)
[»] scaffold0101 (1 HSPs)
scaffold0101 (184-268)||(10756-10840)
[»] scaffold0263 (1 HSPs)
scaffold0263 (221-273)||(20530-20582)
[»] scaffold0013 (1 HSPs)
scaffold0013 (205-281)||(4449-4525)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 307
Target Start/End: Complemental strand, 33101680 - 33101506
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| |||| ||||||||||||  |||| |||||||||| ||||| |||  ||||||||||||| |||| | |||||||||||||||||| |||| ||||    
T  33101680 gtgaggatggatgagaggcaacactggcggaaagtgtttcggtacagtgttgatgagtcttcgctgtagaatgaaaggtgcatgcaggcacgttagcact 33101581  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    | |||||| ||||| ||||||||||||||||| ||||||||  |||||| |||||||||||| | || |||||||    
T  33101580 ccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaaccgtaacttgagg 33101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 22414734 - 22414867
Alignment:
Q  174 gtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    |||||||||||||||||||| || || | | |||||||||  ||||||| |||| |||||  ||||| |||||||||||| |||||| ||| ||||||||    
T  22414734 gtacggtgacgatgagtctttgcggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgta 22414833  T
Q  274 agaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
      |||||| |||||||||||||||||||||||||    
T  22414834 gaaagtgttgtgaaaagtgaatcatatcttgagg 22414867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 133 - 320
Target Start/End: Complemental strand, 5459881 - 5459694
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| |||| ||||||||| |||||||| ||| ||| | |||||||||| |||||||||||||  || ||| |||||||||||||||| | |||| ||||    
T  5459881 gtgaggatggatgagaggcgacgatggcggaatgtgctctggtacggtggcgatgagtcttcgtggtgggacgaaaggtgcatgcaggtacgttagcact 5459782  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg-tgaagttaagtca 320  Q
    | |||| | ||  |||||| || ||||||||||||||||||  |||||| ||| |||||||||||||  ||| || |||||||||||||    
T  5459781 ccaacgttcaaaacagtaacgg-actgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcatacattggggatgaagttaagtca 5459694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 5671773 - 5671885
Alignment:
Q  218 aggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg-aggtgaagttaa 316  Q
    ||||| |||| ||||| |||||| |||| |||||||||||||||||||||||||||  |||||| |||||||||||||||||  ||| ||||||||||||    
T  5671773 aggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatacattgaaggtgaagttaa 5671872  T
Q  317 gtcactcatatat 329  Q
    ||||||| |||||    
T  5671873 gtcactcttatat 5671885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 157 - 307
Target Start/End: Original strand, 34273029 - 34273179
Alignment:
Q  157 tggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaa 256  Q
    |||| |||||||||| ||||||||| ||| ||||||| || || ||| ||||||| | |||| ||| |||| ||||| || ||| |||||||||| ||||    
T  34273029 tggctgaaagtgtttcggtacggtggcgaggagtctttgcggtgggacgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaa 34273128  T
Q  257 ctgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||||||||  |||||| ||| ||||||| ||||| |||||||    
T  34273129 ctgagaaagagtgtgtagaaagtgttgtgtaaagtgactcataccttgagg 34273179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 307
Target Start/End: Original strand, 16050362 - 16050486
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtg 282  Q
    |||||||||||||| || |  ||||||||   |||||||| |||| ||||| |||||| |||||| | |||||||||||||||||||||||  |||||||    
T  16050362 cgatgagtcttcgcggtggatagaaaggtatctgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtg 16050461  T
Q  283 gtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||| |||| |||||||    
T  16050462 gtgaaaagtgaaccataccttgagg 16050486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 43344586 - 43344430
Alignment:
Q  162 gaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgag 261  Q
    ||||||||| |||||||||| ||||||||||| || || ||| ||||||||  |||||  | |||| |||||||||||| ||||||||| || |||| ||    
T  43344586 gaaagtgttctggtacggtggcgatgagtctttgcggtgggatgaaaggtgtctgcagaaacgttagcactcgaacgctcaagtcagtattgaaact-ag 43344488  T
Q  262 aaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgaggtgaagttaagtcac 321  Q
    ||||||||||||| ||||| || |||||||||||||||  ||| ||||||||||| ||||    
T  43344487 aaagagtgtgtaaaaagtg-ggggaaaagtgaatcatacattg-ggtgaagttaactcac 43344430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 26977730 - 26977832
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||| |||||||| |||| ||||| |||||| |||||||||||||||| |||||||||||||||  |||| | ||||||| ||||||||| ||||    
T  26977730 gaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatcataccttg 26977829  T
Q  305 agg 307  Q
    |||    
T  26977830 agg 26977832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 16030357 - 16030487
Alignment:
Q  177 cggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaaga 276  Q
    ||||| |||||||||||| | || | | ||||||||  |||||||| |||| || || || ||| |||||||||||||||||||  |||||||||||  |    
T  16030357 cggtggcgatgagtcttcacggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaa 16030456  T
Q  277 agtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||| ||||||||||||||||| |||||||    
T  16030457 agtgttgtgaaaagtgaatcataccttgagg 16030487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 23728944 - 23728833
Alignment:
Q  181 gacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtg 280  Q
    |||||||||||||||| || | | |||||||| ||||||||| |||| || |   ||||| |||||| |||||||| |||||||||||||||||||||||    
T  23728944 gacgatgagtcttcgcggt-gaacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtg 23728846  T
Q  281 tggtgaaaagtga 293  Q
    | |||||||||||    
T  23728845 ttgtgaaaagtga 23728833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 12177376 - 12177478
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||| | || ||| |||| |||||  || || ||||||||||||||||||||||||||||||||  |||||| ||||||||||||| ||| ||||    
T  12177376 gaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttg 12177475  T
Q  305 agg 307  Q
    |||    
T  12177476 agg 12177478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 25408086 - 25408174
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||||| ||||| || |||| ||||| || ||| |||||||||||| |||||| | |||||||||||||||||| |||||||||||    
T  25408086 gaaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 25408174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 23280361 - 23280273
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaat 295  Q
    ||||||||| ||||| ||||||| ||||| ||| || |||||||||||||||||||||||| |||||||   ||||| |||||||||||||    
T  23280361 gaaaggtgcctgcagacatgttatcactcaaactctcaagtcagtaatggaactgagaaagtgtgtgta--tagtgttgtgaaaagtgaat 23280273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 52565570 - 52565672
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||| ||||| || |||| |||||  ||||| |||||||||| |||||||| |||||||| | |  |||||| ||||||||||||||||| ||||    
T  52565570 gaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtgaatcataacttg 52565669  T
Q  305 agg 307  Q
    |||    
T  52565670 agg 52565672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 1659871 - 1659802
Alignment:
Q  224 gttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||| ||||| |||||| |||||| ||||||| |||||||||| |||||||||||||| |||||||||||    
T  1659871 gttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtga 1659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 330
Target Start/End: Original strand, 18246075 - 18246258
Alignment:
Q  147 gaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtc 246  Q
    |||||||||||||| |||  |  | ||||||||||  |||||||||| || || | | ||||||||  || | ||| |||||||||| |||||| ||||     
T  18246075 gaggcaacgatggcggaagatactctggtacggtggtgatgagtcttggcggtggaacgaaaggtgtctgtaagcacgttaacactccaacgctcaagtg 18246174  T
Q  247 agtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcactcatatatg 330  Q
    |||| | ||| ||||||||||||| ||| |||||| | ||||||||| ||||| ||||| ||||||| |||||||| | ||||||    
T  18246175 agtattagaattgagaaagagtgtataaaaagtgt-gagaaaagtgattcataccttgagggtgaagataagtcacccttatatg 18246258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 14255153 - 14255055
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 281  Q
    |||||||||||||  || | | ||| ||||| |||| ||| | || ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||    
T  14255153 cgatgagtcttcgtggtggaacgaagggtgcctgcaagcacgatagcactccaacgctcaagtcattaatgaaactgagaaagagtgtgtaagaagtgt 14255055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 48637507 - 48637617
Alignment:
Q  172 tggtacggtgacgatgagtcttc-gcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgt 270  Q
    ||||| |||| |||||||||||| || |||| | ||||||||| |||||||| || | |||||  ||||| ||||||||||||||||||| | ||||  |    
T  48637507 tggtatggtggcgatgagtcttctgcggtagaacgaaaggtgcctgcaggcacgtcagcactctgacgctcaagtcagtaatggaactgaaagagaggat 48637606  T
Q  271 gtaagaagtgt 281  Q
    |||||||||||    
T  48637607 gtaagaagtgt 48637617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 4601610 - 4601513
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtg 280  Q
    |||| ||||||||| || | | ||||||||  |||||||| |||| |||||  ||||| |||||||||||| |||||||||| | ||||||| |||||    
T  4601610 cgataagtcttcgcggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaataatgtgtaataagtg 4601513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 12032300 - 12032237
Alignment:
Q  258 tgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgaggtgaagttaagtcac 321  Q
    ||||||||||||||||  |||||| ||| ||| ||||||||| |||||||||||  ||||||||    
T  12032300 tgagaaagagtgtgtagaaagtgttgtgtaaaatgaatcataacttgaggtgaaactaagtcac 12032237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 16299638 - 16299591
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaa 289  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||||    
T  16299638 aagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 16299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 3590817 - 3590874
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgaga 262  Q
    ||||||||||||||||||  ||| |||||  ||| | |||||||||||||||||||||    
T  3590817 gaaaggtgcatgcaggcaccttagcactccgacgatcaagtcagtaatggaactgaga 3590874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 2612734 - 2612663
Alignment:
Q  235 aacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||| ||||||||| |||||||||| |||||||||||| || || ||  |||| ||||||||| |||||||    
T  2612734 aacgctcaagtcagtattggaactgaggaagagtgtgtaaaaaatgcgg-aaaaaatgaatcataccttgagg 2612663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 47253268 - 47253384
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga 305  Q
    |||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  47253268 aaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaatcataccttga 47253367  T
Q  306 -ggtgaagttaagtcac 321  Q
     ||||||| ||||||||    
T  47253368 gggtgaagctaagtcac 47253384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 307
Target Start/End: Original strand, 19809618 - 19809793
Alignment:
Q  131 cagtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaaca 230  Q
    |||||| |||| || | |||||||| |||  ||| ||| | ||||||||||||||||||||||||| || | | ||||||| | ||||| ||||||| ||    
T  19809618 cagtgaggatggataaaaggcaacggtggtggaatgtgctctggtacggtgacgatgagtcttcgcggttg-acgaaaggttcctgcagacatgttagca 19809716  T
Q  231 ctcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||| |||||| |||||||||||| |||| ||||||||||||||  |||||| ||||||||||||| ||| |||||||    
T  19809717 ctccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgagg 19809793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 10981825 - 10981949
Alignment:
Q  174 gtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    ||||||||| |||||||||||||||| ||| ||||||||| |||||  | |||  ||||| ||| || |||||||||||||||| |||||||||||||||    
T  10981825 gtacggtgatgatgagtcttcgcagtgggacgaaaggtgcctgcagcaacgttggcactccaacactcaagtcagtaatggaaccgagaaagagtgtgta 10981924  T
Q  274 agaagtgtggtgaaaagtgaatcata 299  Q
    | |||||||| |||||||||||||||    
T  10981925 aaaagtgtgg-gaaaagtgaatcata 10981949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 12683751 - 12683869
Alignment:
Q  181 gacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtg 280  Q
    ||||||||||||| || || | | ||||||||| |||||||| |||| ||||| |||||| |||| ||||||| |||||||||||||||||||  |||||    
T  12683751 gacgatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtg 12683850  T
Q  281 tggtgaaaagtgaatcata 299  Q
    | |||||||||||||||||    
T  12683851 ttgtgaaaagtgaatcata 12683869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 15742283 - 15742166
Alignment:
Q  176 acggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaag 275  Q
    |||| |||||||||||||||  || |   ||||||||| ||| |||| |||| |||||  ||||| ||||||||||||||||||||||| ||||||||||    
T  15742283 acggcgacgatgagtcttcgtggtggagcgaaaggtgcctgctggcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaag 15742184  T
Q  276 aagtgtggtgaaaagtga 293  Q
    |||||| |||||||||||    
T  15742183 aagtgttgtgaaaagtga 15742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 15514658 - 15514574
Alignment:
Q  209 ggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| || ||||| |||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||||    
T  15514658 ggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtga 15514574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 19643723 - 19643794
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||| ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||| |||||||    
T  19643723 acgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaatcataccttgagg 19643794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 16012562 - 16012465
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgaggtgaag 312  Q
    |||||||| ||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||  | |||| ||||||    |||||||||||||||    
T  16012562 tgcaggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgtaagaagcattgtgagaagtgatatgtatcttgaggtgaag 16012465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 29157092 - 29157201
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||||||||| || |||  ||||| |||||| |||| |||||||||||||||||| ||||||||  |||||| ||| |||||||| |||| ||||    
T  29157092 gaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaaccataccttg 29157191  T
Q  305 a-ggtgaagt 313  Q
    | ||||||||    
T  29157192 atggtgaagt 29157201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 14602106 - 14602029
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtg 292  Q
    |||||||| |||| || || |||||| |||||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  14602106 tgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 14602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 3981873 - 3982002
Alignment:
Q  138 gatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaac 237  Q
    |||| ||||||||||||| |||| |||| ||||  ||||| |||| ||||||||||| | || | | |||||||||||||| ||| |||| ||||| |||    
T  3981873 gatggatgagaggcaacggtggcggaaaatgttccggtacagtgaggatgagtcttcacggtggaacgaaaggtgcatgcatgcacgttagcactccaac 3981972  T
Q  238 gctaaagtcagtaatggaactgagaaagagtg 269  Q
     || |||||  |||||||||||| ||||||||    
T  3981973 actcaagtc--taatggaactgaaaaagagtg 3982002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 5518508 - 5518618
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtg 282  Q
    |||| |||||||||| | | | ||||||||  ||||| || |||| ||||  |||||| ||||||||||| ||||||||| ||| ||||||||||||||     
T  5518508 cgataagtcttcgcaatggaacgaaaggtgagtgcagacacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgtaagaagtgtt 5518607  T
Q  283 gtgaaaagtga 293  Q
    ||| |||||||    
T  5518608 gtggaaagtga 5518618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 2674671 - 2674573
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||||| |||||| ||||||| ||||| |||||  |||||| ||||| ||||||||    |||||||  |||||| ||||||||||||||||| ||||    
T  2674671 gaaaggtgtatgcagtcatgttagcactccaacgcacaagtcaataatgtaactgaga----gtgtgtagaaagtgttgtgaaaagtgaatcataccttg 2674576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 13171069 - 13171134
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgt 270  Q
    ||||||||| |||||||| |||| ||||| ||| || |||||||||||||||||||| ||||||||    
T  13171069 gaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgt 13171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 19818651 - 19818783
Alignment:
Q  172 tggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtg 271  Q
    ||||||||||||||||||||||||| || ||| ||||||| | | |||  |||||| ||||| |||||| ||||||||| |  |||  |  |||||||||    
T  19818651 tggtacggtgacgatgagtcttcgcggt-ggacgaaaggttcctacagatatgttagcactccaacgctcaagtcagtacttaaaccaatcaagagtgtg 19818749  T
Q  272 taagaagtgtggtgaaaagtgaatcatatcttga 305  Q
    ||  |||||| ||||||||||||| ||| |||||    
T  19818750 tagaaagtgttgtgaaaagtgaattataccttga 19818783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 26894880 - 26894721
Alignment:
Q  147 gaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtc 246  Q
    |||||||||||| | ||||||| || ||||||||| ||  ||||||||   || ||| |||||||||||||| |||||||  | |||  ||||| |||||    
T  26894880 gaggcaacgatgtcggaaagtgcttcggtacggtggcggcgagtcttcatggtgggacgaaaggtgcatgcatgcatgttggctctctgacgctcaagtc 26894781  T
Q  247 agtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||   |||| |||||| |||||| ||| |||||| | |||||||||||| || |||||||    
T  26894780 agtttaggaaatgagaaggagtgtttaaaaagtgt-gagaaaagtgaatcgtaccttgagg 26894721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 40979101 - 40979055
Alignment:
Q  276 aagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcac 321  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  40979101 aagtgtggtgaaaagtgaatcgtatcttgagggtgaagttaagtcac 40979055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 14003134 - 14003073
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatca 297  Q
    ||||| ||||||||||||||||||||||||||| |||   ||||||  |||||| |||||||    
T  14003134 acgctcaagtcagtaatggaactgagaaagagtttgtggaaagtgttatgaaaaatgaatca 14003073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 321
Target Start/End: Original strand, 45714918 - 45715102
Alignment:
Q  138 gatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaac 237  Q
    |||| ||||| |||||| ||||| ||||||| |  |||||  || ||||||||||||   || | | |||||||||||||||||| |||| ||||| |||    
T  45714918 gatggatgagtggcaacaatggcggaaagtgctccggtacattggcgatgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaac 45715017  T
Q  238 gctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg-aggtgaagttaagtcac 321  Q
    ||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||| |||||||| ||||||||    
T  45715018 gctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtgaaaattgaatcataccttgaaggtgaagctaagtcac 45715102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 36267464 - 36267590
Alignment:
Q  181 gacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtg 280  Q
    ||||||||||||||||||| | | ||||||||| |||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||  ||| |    
T  36267464 gacgatgagtcttcgcagtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaaggg 36267563  T
Q  281 tggtgaaaagtgaatcatatcttgagg 307  Q
    | ||||||||||||||||| |||||||    
T  36267564 ttgtgaaaagtgaatcataccttgagg 36267590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 326
Target Start/End: Complemental strand, 27846687 - 27846498
Alignment:
Q  138 gatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaac 237  Q
    |||| ||||||||||||  || | ||| |||||  ||||||||| | ||||||||||||||| ||| |||| |||| |||||||| |||| ||||| |||    
T  27846687 gatggatgagaggcaacagtgacggaatgtgttccggtacggtggcaatgagtcttcgcagttggacgaaaagtgcctgcaggcacgttagcactccaac 27846588  T
Q  238 gctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcactcata 326  Q
    | | ||||||||||||||||||||||| ||| ||||  |||||| ||| |||||||||  || ||||| |||||||||||||||| ||||    
T  27846587 gatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaattgtaccttgagggtgaagttaagtcacccata 27846498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 143 - 299
Target Start/End: Complemental strand, 12127826 - 12127670
Alignment:
Q  143 atgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaa 242  Q
    ||||||||||||  ||||||||| || || |||||||||  |||| |||||||| || ||| ||||||| | |||||||| |||| ||||| |||||| |    
T  12127826 atgagaggcaacattggcagaaaatgcttcggtacggtggtgatgggtcttcgcggtgggacgaaaggtacctgcaggcacgttagcactccaacgctca 12127727  T
Q  243 agtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    ||||||||||| |||| |||| | |||||||  |||||| |||||||||||||||||    
T  12127726 agtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtgaatcata 12127670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 3586321 - 3586455
Alignment:
Q  173 ggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgt 272  Q
    ||||||| |||| |||||||| || || | | ||||||||||||| |||| ||||  ||||  ||||| ||||||||||||||||||||||| |||| ||    
T  3586321 ggtacggcgacgttgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagt 3586420  T
Q  273 aagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |  |||||| ||||||||||||||||| |||||||    
T  3586421 agaaagtgttgtgaaaagtgaatcataccttgagg 3586455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 19919229 - 19919065
Alignment:
Q  143 atgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaa 242  Q
    ||||||||||| | |||||||||||| |  |||| |||| |||| ||||||||  || | | ||||||||| |||||| |  |||  |||| ||||| ||    
T  19919229 atgagaggcaatggtggcagaaagtgctccggtatggtggcgatcagtcttcgtggtggaacgaaaggtgcctgcaggaacattagaactctaacgccaa 19919130  T
Q  243 agtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||| |||||||| ||||||||||| ||||  |||||| ||||||||||||||||| |||||||    
T  19919129 agtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaatcataccttgagg 19919065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 45258320 - 45258151
Alignment:
Q  138 gatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaac 237  Q
    |||| ||||||||||||| ||   |||| || |||| || |||| |||||||||||||| || | | ||||| ||  |||||||| |||||||||| ||     
T  45258320 gatggatgagaggcaacggtgatggaaaatgctttgatatggtggcgatgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaa 45258221  T
Q  238 gctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||| |||| ||||||| |||| ||||||| |||||   |||||| ||||||||||||||||| |||||||    
T  45258220 gctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtgaatcataccttgagg 45258151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 12168962 - 12169065
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgcta-aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatctt 303  Q
    ||||||||  ||||||||  ||||||||| ||||||  ||||||||||||||||| ||||||||||||||  |||||| ||||||||||||| ||| |||    
T  12168962 gaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattatacctt 12169061  T
Q  304 gagg 307  Q
    ||||    
T  12169062 gagg 12169065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 293
Target Start/End: Original strand, 18135842 - 18135949
Alignment:
Q  186 tgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtg 285  Q
    ||||||||| | || ||| ||||||||| || ||||| ||||  ||||  ||||| |||| ||||||||||||||||||||||||||||||||||| ||     
T  18135842 tgagtcttcacggtgggatgaaaggtgcctgtaggcacgttagtactctgacgctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtc 18135941  T
Q  286 aaaagtga 293  Q
    ||||||||    
T  18135942 aaaagtga 18135949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 36022421 - 36022551
Alignment:
Q  175 tacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaa 274  Q
    ||||||| | ||||||||| | ||||| | |||||||  ||| ||||| |||||||||| |||||| ||||||||| ||  ||||||||||||| |||||    
T  36022421 tacggtggcaatgagtctttgtagtagaacgaaaggtatatgtaggcacgttaacactctaacgctcaagtcagtattgagactgagaaagagtttgtaa 36022520  T
Q  275 gaagtgtggtgaaaagtgaatcatatcttgag 306  Q
     |||||| | | ||||||||||||||||||||    
T  36022521 aaagtgt-gagcaaagtgaatcatatcttgag 36022551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 24499798 - 24499873
Alignment:
Q  224 gttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    |||| ||||| |||||| ||||||||||||||| ||||||||||||||||  || ||| |||||||||||||||||    
T  24499798 gttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcata 24499873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 20120337 - 20120439
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||  |||||||| |||| |||||  || || |||||||||||| ||||||||||||||||||   |||||  |||| |||||||||||| ||||    
T  20120337 gaaaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatcataccttg 20120436  T
Q  305 agg 307  Q
    |||    
T  20120437 agg 20120439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 19050505 - 19050448
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||||||||    
T  19050505 acgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtga 19050448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 15825154 - 15825230
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagt 291  Q
    |||||||| |||| ||||   ||||| ||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  15825154 tgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 18770317 - 18770392
Alignment:
Q  218 aggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| |||| |||||  ||||| |||||||||||| || ||||||||||||||||  |||||| |||||||||||    
T  18770317 aggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 29137922 - 29137979
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| |||||| ||||| ||||||||||||||||||||||| ||| ||| |||||||    
T  29137922 acgctcaagtcattaatgcaactgagaaagagtgtgtaagaaatgttgtggaaagtga 29137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 29711009 - 29711094
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||| ||||| ||| |||| ||||| |||||| |||||| |||||||| |||  ||||| ||||| ||||||| |||||||||||    
T  29711009 aaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaattga--aagagagtgtacgaagtgttgtgaaaagtga 29711094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 10923283 - 10923177
Alignment:
Q  188 agtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaa 287  Q
    ||||||||| || | | |||||||| ||| ||||| |||| |||||  || || |||||||| |||||||| | ||||||||||||  |||||  |||||    
T  10923283 agtcttcgcggtggaacgaaaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaa 10923184  T
Q  288 aagtgaa 294  Q
    |||||||    
T  10923183 aagtgaa 10923177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 24157407 - 24157321
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagt 291  Q
    ||||||||| | || ||| |||| |||||  ||||| ||||||||||||||||||||| | |  || |||||||||| |||||||||    
T  24157407 gaaaggtgcctacatgcacgttagcactctgacgctcaagtcagtaatggaactgagagataaagtctaagaagtgttgtgaaaagt 24157321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 15390655 - 15390598
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| |||| ||| |||||||| | ||| |||||||||||||||| |||||||||||    
T  15390655 acgctcaagtaagtgatggaactaataaacagtgtgtaagaagtgttgtgaaaagtga 15390598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 12634836 - 12634880
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagt 249  Q
    |||||||||||||||||| |||||||||| ||| || ||||||||    
T  12634836 gaaaggtgcatgcaggcacgttaacactccaactcttaagtcagt 12634880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 321
Target Start/End: Original strand, 8938833 - 8939018
Alignment:
Q  138 gatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcg--cagtaggaagaaaggtgcatgcaggcatgttaacactcga 235  Q
    |||| ||||||||||| | |||| ||||||| | |||||||||| ||||||||||| |  | |||| | |||||||||||||||||| |||||||||| |    
T  8938833 gatggatgagaggcaatggtggcggaaagtgctctggtacggtggcgatgagtctttgtgcggtagaacgaaaggtgcatgcaggcacgttaacactcca 8938932  T
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcac 321  Q
    | |||  |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||  |||| ||||||| ||||||||    
T  8938933 atgctctagtcagtattggaactgagaaagagtgtgtaaaaagtgtgg-gaaaagtgaatcatacattgagggtgaagctaagtcac 8939018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 307
Target Start/End: Original strand, 22903016 - 22903185
Alignment:
Q  138 gatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaac 237  Q
    |||| ||||||||||||| |||| ||||||| ||  ||||||||  ||||||| ||||| || | | |||||||    | |||||||||| ||||  |||    
T  22903016 gatggatgagaggcaacgttggcggaaagtgcttcagtacggtggtgatgagttttcgcggtggaacgaaaggttttcgtaggcatgttagcacttcaac 22903115  T
Q  238 gctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  22903116 gctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagg 22903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 307
Target Start/End: Original strand, 20025225 - 20025375
Alignment:
Q  157 tggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaa 256  Q
    |||| ||| ||| |||||||||||| | |||||||||||| || ||| ||||||||  ||||  || |||||||||| |||||||  ||||| |||| ||    
T  20025225 tggcggaatgtgctttggtacggtgtcaatgagtcttcgcggtgggacgaaaggtgtctgcacacacgttaacactccaacgctactgtcaggaatgaaa 20025324  T
Q  257 ctgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||||||||  |||||| ||| ||||||||||||  |||||||    
T  20025325 ctgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcattccttgagg 20025375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 22865735 - 22865839
Alignment:
Q  189 gtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaa 288  Q
    ||||||||||| | | |||||||||||||||| | |||| ||||   ||||| |||| |||||||||||||||||| |||||||||||| ||| ||||||    
T  22865735 gtcttcgcagtggaacgaaaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaa 22865834  T
Q  289 agtga 293  Q
    |||||    
T  22865835 agtga 22865839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 24647298 - 24647366
Alignment:
Q  225 ttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||||| |||||| || |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  24647298 ttaacactccaacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 24647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 321
Target Start/End: Complemental strand, 27083356 - 27083222
Alignment:
Q  187 gagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtga 286  Q
    |||||||||| |||| | |||| |||  ||||| || |||| ||||| ||| || |||||||||| | ||||| |||||||||||||  |||||| ||||    
T  27083356 gagtcttcgcggtagaacgaaatgtgtctgcagacacgttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtagaaagtgttgtga 27083258  T
Q  287 aaagtgaatcatatcttga-ggtgaagttaagtcac 321  Q
    ||||||||||||| ||||| ||||||||||||||||    
T  27083257 aaagtgaatcataccttgagggtgaagttaagtcac 27083222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 25537377 - 25537483
Alignment:
Q  187 gagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtga 286  Q
    |||||||||| || | | ||||||||| |||| ||| |||| ||||| |||||| |||   ||||||||||||||||||| |||||| ||||||| ||||    
T  25537377 gagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtga 25537476  T
Q  287 aaagtga 293  Q
    |||||||    
T  25537477 aaagtga 25537483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 32418587 - 32418485
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||| || |||||||| || |||||||  ||||| |||||| | ||||||| |||||||||||||||   ||||| ||||| ||||||||||| ||||    
T  32418587 gaaaggagcctgcaggcacgtcaacactctgacgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtgaatcataccttg 32418488  T
Q  305 agg 307  Q
    |||    
T  32418487 agg 32418485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 30827060 - 30827172
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||||||||||||||| |||| ||||| |||| |||||| |||    ||| ||||| ||| ||||||| |||||| | ||||||||||||||| ||||    
T  30827060 gaaaggtgcatgcaggcacgttagcactcaaacgttaaagtaagttccagaaatgagatagaatgtgtaataagtgtag-gaaaagtgaatcataccttg 30827158  T
Q  305 aggtgaagttaagt 318  Q
     ||||||| |||||    
T  30827159 gggtgaagctaagt 30827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 7449752 - 7449875
Alignment:
Q  175 tacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaa 274  Q
    ||||||||||||||||||| || || ||| ||||||||||| ||| || |||| ||||| |||||| |||||||||   ||| |||||  || ||||| |    
T  7449752 tacggtgacgatgagtctttgcggtgggacgaaaggtgcattcagacacgttagcactctaacgcttaagtcagtatgagaaatgagattgaatgtgtga 7449851  T
Q  275 gaagtgtggtgaaaagtgaatcata 299  Q
     || ||||| |||||||||||||||    
T  7449852 aaaatgtgg-gaaaagtgaatcata 7449875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 26994676 - 26994608
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||| ||||||||||||||| ||||||||||||| ||  | |||| ||||||||||||||||| ||||    
T  26994676 acgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttg 26994608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 25333725 - 25333819
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    ||||||| | ||||||||| |||  ||||  ||||| |||||||||||| |||| ||| ||||||||||  |||||| || ||||||||||||||    
T  25333725 gaaaggtacttgcaggcatattagtactccgacgctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtgaatcata 25333819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 16621163 - 16621264
Alignment:
Q  170 tttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtg 269  Q
    ||||||||  || |||||||||||| | || | | |||||||| ||| ||||| |||||||||  |||||| ||| || || ||||||||||||||||||    
T  16621163 tttggtacattggcgatgagtcttcacggtggaacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaagagtg 16621262  T
Q  270 tg 271  Q
    ||    
T  16621263 tg 16621264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 25829051 - 25829001
Alignment:
Q  243 agtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| |||||||| ||||||| |||||||||||||| | |||||||||||    
T  25829051 agtcaataatggaattgagaaaaagtgtgtaagaagtattgtgaaaagtga 25829001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 26163625 - 26163691
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtg 271  Q
    |||||||||||||| |||  ||| ||||| |||||| ||||||| |||| |||| ||||||||||||    
T  26163625 gaaaggtgcatgcatgcacattagcactccaacgctcaagtcagaaatgaaactaagaaagagtgtg 26163691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 4477156 - 4477233
Alignment:
Q  173 ggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagta 250  Q
    ||||||||| ||||||||||| || || ||| ||| |||||  ||||||| ||||| |||| |||||| |||||||||    
T  4477156 ggtacggtggcgatgagtctttgcggtgggacgaagggtgcccgcaggcacgttaatactccaacgctcaagtcagta 4477233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 19993326 - 19993182
Alignment:
Q  145 gagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaag 244  Q
    ||||||||||| |||| ||||||| |  ||||||| |    ||||||||||| || |||| |||||| | ||||| ||  ||| || || ||  || |||    
T  19993326 gagaggcaacggtggcggaaagtgctccggtacggagggattgagtcttcgcggtgggaaaaaaggttcttgcagacacattagcagtccaatactcaag 19993227  T
Q  245 tcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaa 289  Q
    ||||||||||||||||||||||| ||||   |||||| |||||||    
T  19993226 tcagtaatggaactgagaaagagcgtgttgaaagtgttgtgaaaa 19993182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 26348180 - 26348104
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 281  Q
    ||||||||  |||||||| |||| ||||| |||||| |||||| |||||||||| | | |||  |||||||||||||    
T  26348180 gaaaggtgtctgcaggcacgttagcactccaacgctcaagtcattaatggaactaaaagagatagtgtaagaagtgt 26348104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 329
Target Start/End: Original strand, 13754676 - 13754873
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| |||| |||||||||||| |||||  || ||| |  | |||||||  || ||||||||||| | ||| ||||||||| ||| |||| |||||||||    
T  13754676 gtgaggatggatgagaggcaacaatggcgaaatgtgatgcgatacggtggtgaagagtcttcgcaatgggacgaaaggtgcctgctggcacgttaacact 13754775  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcactcatatat 329  Q
      | |||| |||||||||||| |||||||||||||||||||  |||||| ||| |||||||||| || ||||| ||||||| |||||||||| |||||    
T  13754776 acatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctaccttgagggtgaagctaagtcactcttatat 13754873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 18322934 - 18323027
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||  || ||| |||||||||||||||||    
T  18322934 aaaggtgcatgcagacatgttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaatcata 18323027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 299
Target Start/End: Complemental strand, 17927877 - 17927711
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| |||| || ||||||| ||||||| ||||||||| | ||| |||| |||||| |||| |  || ||| |||||||||||||| ||| |||| ||||    
T  17927877 gtgaggatggattagaggcagcgatggcggaaagtgttctagtatggtggcgatgactctttgtggtgggacgaaaggtgcatgcatgcacgttagcact 17927778  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    | |||||| |||||||||||||||||||||  |||| ||||  ||||||  ||||| ||||||||||    
T  17927777 ccaacgcttaagtcagtaatggaactgagattgagtatgtagaaagtgttatgaaaggtgaatcata 17927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 26917071 - 26916898
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| |||| ||||||||||||| |||||||||| | | | |||| ||| ||| |||||||||   | | | |||||||||||  ||||| |||| | |     
T  26917071 gtgaggatggatgagaggcaacggtggcagaaagggctctagtacagtggcgacgagtcttcgtgatggaacgaaaggtgcatttaggcacgttagcgca 26916972  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgag 306  Q
    | |||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||| ||||| ||||||    
T  26916971 ctaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcataccttgag 26916898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 24576684 - 24576598
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagt 291  Q
    ||||||||| |||||||| ||||||||||  ||||| ||||||||||||||||| | || ||||||||||||||||| |||||||||    
T  24576684 gaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagt 24576598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 30477559 - 30477733
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| |||| ||||||||||||  |||| ||||||| |   ||| |||| | ||||| |||||| ||  || ||||| ||  |||| ||| |||| ||||    
T  30477559 gtgatgatggatgagaggcaacagtggcggaaagtgctccagtatggtggcaatgagacttcgcggtgagacgaaagatgtctgcatgcacgttagcact 30477658  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    | |||||| |||||||||| | |||||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  30477659 ccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagg 30477733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 6928154 - 6928089
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  6928154 aagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagg 6928089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 3459585 - 3459477
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtg-tggtgaaaagtgaatcatatctt 303  Q
    ||||||||| |||||||| |||| |||||   |||| |||||||||||||||||||| |||||||||||  ||||| ||||||||||| |||| || |||    
T  3459585 gaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagtaaatcgtacctt 3459486  T
Q  304 gaggtgaag 312  Q
    |||||||||    
T  3459485 gaggtgaag 3459477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 15057994 - 15058127
Alignment:
Q  174 gtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    |||||||||||||||||||| |  || | | |||||||||||||||||| |||| ||||  |||||  |||| ||||||| || ||||||| | ||||||    
T  15057994 gtacggtgacgatgagtctttgtggtggaacgaaaggtgcatgcaggcacgttagcactacaacgcacaagttagtaatgaaattgagaaaaaatgtgta 15058093  T
Q  274 agaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
      |||||||||||||| | ||||||| |||||||    
T  15058094 gaaagtgtggtgaaaaataaatcataccttgagg 15058127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 1911239 - 1911191
Alignment:
Q  14 gaacctagttgagtcttgagacatgatttatttatattcttctttcttg 62  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1911239 gaacctagttgagccttgagacatgatttatttatattcttctttcttg 1911191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 321
Target Start/End: Original strand, 13764961 - 13765096
Alignment:
Q  187 gagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtga 286  Q
    |||||||||| ||  || ||||||||  |||||||| ||||| |||| || | | |||| ||||||| |||||||||||||||||||  |||||| |||     
T  13764961 gagtcttcgcggtgtgacgaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgt 13765060  T
Q  287 aaagtgaatcatatcttg-aggtgaagttaagtcac 321  Q
    ||||||||| || ||||| |||||||| ||||||||    
T  13765061 aaagtgaataatgtcttgaaggtgaagctaagtcac 13765096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 1909827 - 1909742
Alignment:
Q  187 gagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgt 272  Q
    ||||||| ||||| | | ||||||||||||||| || |||| || |  ||||||||||||||||||| ||||||||||||||||||    
T  1909827 gagtctttgcagtggaacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtgtgt 1909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 23269203 - 23269304
Alignment:
Q  172 tggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtg 271  Q
    |||||||||| ||||||||||| || || | | ||||||||  | |||||| |||| ||||| ||| || ||||||||||||||||||| ||||||||||    
T  23269203 tggtacggtggcgatgagtctttgcggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtgtg 23269302  T
Q  272 ta 273  Q
    ||    
T  23269303 ta 23269304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 24070865 - 24070936
Alignment:
Q  228 acactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    |||||| ||| || ||||||||||||||||| ||||||||||||||  |||||| |||| ||||||||||||    
T  24070865 acactccaacacttaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtgaatcata 24070936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 24507447 - 24507549
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||  |||| ||| ||||  |||| |||| | |||||| |||||||| ||||||||||||| ||  |||||| ||||||||||||||||| ||||    
T  24507447 gaaaggtgtctgcatgcacgttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaatcataccttg 24507546  T
Q  305 agg 307  Q
    |||    
T  24507547 agg 24507549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 17698349 - 17698296
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaat 295  Q
    |||||||||||||||| |||||||||||||||  |||||| |||||||||||||    
T  17698349 aagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 17698296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 21416759 - 21416819
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatc 296  Q
    ||||| |||||||||||| |||||||||||||||||||  |||||| ||||||| ||||||    
T  21416759 acgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatc 21416819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 24677678 - 24677603
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaag 290  Q
    |||| |||||||| ||||| || ||| ||||||||| ||||||||||| |||  ||||||||||||| ||| ||||    
T  24677678 tgcaagcatgttagcactccaatgctcaagtcagtattggaactgagagagaaagtgtaagaagtgttgtggaaag 24677603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 379674 - 379794
Alignment:
Q  173 ggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgt 272  Q
    ||||||| |||||||||||||||| || | | |||||||||||  ||||| |||| ||||   || || |||||||||||||||||||||||||||||||    
T  379674 ggtacggcgacgatgagtcttcgcggtggaacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgt 379773  T
Q  273 aagaagtgtggtgaaaagtga 293  Q
    ||||||||| |||||||||||    
T  379774 aagaagtgttgtgaaaagtga 379794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 121075 - 121024
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  121075 aagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 121024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 19730696 - 19730604
Alignment:
Q  201 ggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| || |||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  19730696 ggaagtaaagtgcatgcaggcatgttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagtga 19730604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 316
Target Start/End: Complemental strand, 3404994 - 3404851
Alignment:
Q  174 gtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    ||||||||  |||||||||||||| |  || |||| |||  || |||||  ||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  3404994 gtacggtggtgatgagtcttcgcaatgagacgaaatgtgtctgtaggcacattaacactctaacacttaagtcagtaatggaactgagaaagagtgtgta 3404895  T
Q  274 agaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaa 316  Q
      |||||| ||||||| ||||||||| ||||| |||||||||||    
T  3404894 gaaagtgttgtgaaaaatgaatcataccttgagggtgaagttaa 3404851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 25008491 - 25008398
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    ||||||||||||  |||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||    
T  25008491 gaaaggtgcatgtcggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgtgg-gtaaagtgaatcata 25008398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 15480440 - 15480325
Alignment:
Q  207 aaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgag 306  Q
    ||||||| |||| ||| |||| ||||||||| || |||||| ||||| |||||||||| ||||||||  |||||| ||||||||||||||||| ||||||    
T  15480440 aaggtgcctgcaagcaagttatcactcgaactctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 15480341  T
Q  307 -gtgaagttaagtcac 321  Q
     |||||| ||||||||    
T  15480340 agtgaagctaagtcac 15480325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 34187217 - 34187372
Alignment:
Q  133 gtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacact 232  Q
    |||| ||||||||||||||||||  ||| |||||||||  | ||| |||  ||| |||||| || || | | ||||||||  ||||| || |||| |||     
T  34187217 gtgaggatgaatgagaggcaacggcggcggaaagtgttccgctacagtggtgataagtctttgcggtggaacgaaaggtgtctgcagacacgttagcaca 34187316  T
Q  233 cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaa 288  Q
    | ||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
T  34187317 ccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtgaaa 34187372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 18147264 - 18147390
Alignment:
Q  173 ggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgt 272  Q
    |||||| ||||||||||||||| | ||   | ||||||||| || ||| | |||||||||| |||||| |||||| ||||||||| ||||||||||||||    
T  18147264 ggtacgatgacgatgagtcttctcggtgaaacgaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgt 18147363  T
Q  273 aagaagtgtggtgaaaagtgaatcata 299  Q
    |  |||||| ||||||||||| |||||    
T  18147364 agaaagtgttgtgaaaagtgactcata 18147390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 19305467 - 19305556
Alignment:
Q  218 aggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||| |||| ||||  |||||| |||||||||||||||||||| |||||||||||  |||||| ||||||||||||||||| |||||||    
T  19305467 aggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagg 19305556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 16343541 - 16343657
Alignment:
Q  177 cggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaaga 276  Q
    ||||| ||||||||||||||||| |   ||| ||||| |||||||| |||| ||||| ||| || ||||||||||||||||||||| |||  ||||||||    
T  16343541 cggtggcgatgagtcttcgcagtggagcgaagggtgcctgcaggcacgttagcactccaacactcaagtcagtaatggaactgagagagaaagtgtaaga 16343640  T
Q  277 agtgtggtgaaaagtga 293  Q
    ||||| ||| |||||||    
T  16343641 agtgttgtggaaagtga 16343657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 31295636 - 31295548
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| ||| ||||||||||||| ||||   ||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  31295636 gaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 34064165 - 34064273
Alignment:
Q  185 atgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggt 284  Q
    |||||||||| | |||| | ||||||||  |||||||| |||||||||   ||| | |||||||||||| |||| |||||||||||||||||||||| ||    
T  34064165 atgagtcttcacggtagaacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgt 34064264  T
Q  285 gaaaagtga 293  Q
    |||||||||    
T  34064265 gaaaagtga 34064273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 9292120 - 9292019
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||||| |||| ||| |||| ||| | |||||| ||||||||| ||||||||||||| ||| ||||| |||||||| ||||||||||||||| ||||    
T  9292120 gaaaggtgcctgcaagcacgttagcacgctaacgctcaagtcagtattggaactgagaaatagtatgtaaaaagtgtgg-gaaaagtgaatcataccttg 9292022  T
Q  305 agg 307  Q
    |||    
T  9292021 agg 9292019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 12449705 - 12449596
Alignment:
Q  184 gatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtgg 283  Q
    ||||||||||||  || ||| ||||||||  || ||||| |||| |||||  ||||| |||||||||||||| |||| |||||||||||||||||||| |    
T  12449705 gatgagtcttcgtggtgggacgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttg 12449606  T
Q  284 tgaaaagtga 293  Q
    || |||||||    
T  12449605 tggaaagtga 12449596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 34573075 - 34572978
Alignment:
Q  225 ttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcac 321  Q
    |||| |||| |||||| |||| |||||| ||||| ||||| ||||||||  ||||||||||||||||||||||||  |||| ||||||||||||||||    
T  34573075 ttaatactccaacgctcaagttagtaatagaactaagaaaaagtgtgtagaaagtgtggtgaaaagtgaatcatacattgagggtgaagttaagtcac 34572978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 27861048 - 27860961
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||||||  |||||||||||||  |||| ||| || ||||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  27861048 aaaggtgtctgcaggcatgttagtactctaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtga 27860961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 30680961 - 30681084
Alignment:
Q  184 gatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtgg 283  Q
    ||||||||||||| || ||| ||||||||  ||||  || |||| ||||| |||||| |||||||||||| |||||| |||||| |||||  | || | |    
T  30680961 gatgagtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattg 30681060  T
Q  284 tgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||||||| |||||||    
T  30681061 tgaaaagtgaatcataccttgagg 30681084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 9277401 - 9277300
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||| | ||||| || |||| ||||  |||||| ||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||||||| ||||    
T  9277401 gaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgtggag-aaagtgaatcataccttg 9277303  T
Q  305 agg 307  Q
    |||    
T  9277302 agg 9277300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 12488127 - 12488009
Alignment:
Q  175 tacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaa 274  Q
    ||||| |||||||||||||||  || | | ||| |||||||||| ||| |||| ||||| |||||| |||||| |||| ||||| | | |||||||||||    
T  12488127 tacggcgacgatgagtcttcgttgtggaacgaagggtgcatgcatgcacgttagcactctaacgctgaagtcaataatagaactaaaatagagtgtgtaa 12488028  T
Q  275 gaagtgtggtgaaaagtga 293  Q
    | ||||| |||||||||||    
T  12488027 gtagtgttgtgaaaagtga 12488009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 689921 - 689856
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||||||||||||||| |||||||  |||||| |||||||||||||| || |||||||    
T  689921 aagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatcgtaccttgagg 689856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 9403193 - 9403250
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  9403193 acgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtga 9403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 14268440 - 14268539
Alignment:
Q  224 gttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga--ggtgaagttaagtcac 321  Q
    |||| ||||| |||||| ||||||||||||||||| ||| | ||||||||  ||||||  |||||||||||||||||| |||  ||||||| ||||||||    
T  14268440 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagctaagtcac 14268539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 4251133 - 4251043
Alignment:
Q  217 caggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||| | |||||||| |||| | |||||||||||| || |||||||||||||| |   ||||| ||||||||| |||||||||||||||    
T  4251133 caggcacgataacactccaacgttcaagtcagtaatgaaaatgagaaagagtgtggagagagtgttgtgaaaagtaaatcatatcttgagg 4251043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 14080474 - 14080567
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    ||||||||| | ||||||  ||| |||||  ||||| |||| ||||||| |||||||||||||||||||  |||||| |||||||||||||||||    
T  14080474 gaaaggtgcctacaggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtgaatcata 14080567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 19277135 - 19277089
Alignment:
Q  247 agtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  19277135 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtga 19277089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 20148307 - 20148405
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||| |||||||||| || |||| ||||| | |||| |||| |||||||||| |||||||||  |||||  |||||| ||||||||||||||||| ||||    
T  20148307 gaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaaga--gtgtagaaagtgttgtgaaaagtgaatcataccttg 20148404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 22184521 - 22184423
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||| |||||||||| || |||| ||||| | |||| |||| |||||||||| |||||||||  |||||  |||||| ||||||||||||||||| ||||    
T  22184521 gaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaaga--gtgtagaaagtgttgtgaaaagtgaatcataccttg 22184424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 10115749 - 10115670
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtca 320  Q
    |||||||||||| ||||||||||||| | |||| |||| | ||||||||||||||||| || || ||||||| |||||||    
T  10115749 aagtcagtaatgaaactgagaaagagcgagtaaaaagttttgtgaaaagtgaatcatacctcgagggtgaagctaagtca 10115670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 304
Target Start/End: Complemental strand, 10927038 - 10926896
Alignment:
Q  162 gaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgag 261  Q
    ||||||| | |||||||||| ||| ||||||| || ||  || ||||||| ||||||| || |||| |||   |||||  || |||||| ||||||||||    
T  10927038 gaaagtgatctggtacggtggcgacgagtctttgcggtgagacgaaaggttcatgcagacacgttagcacctcaacgcccaattcagtattggaactgag 10926939  T
Q  262 -aaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
     |||||||| |||| |||||||| ||||||||||| ||||||||    
T  10926938 aaaagagtgcgtaaaaagtgtgg-gaaaagtgaattatatcttg 10926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 17380124 - 17380178
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatc 296  Q
    ||||||||||| |||||||||||||||||| |  |||||| ||||||||||||||    
T  17380124 aagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtgaatc 17380178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 11087529 - 11087594
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||| |||||||||||||| ||||    |||| ||||||||||||||||| |||||||    
T  11087529 aagtcagtaatgtaactgagaaagagtatgtagattgtgttgtgaaaagtgaatcataccttgagg 11087594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 16130995 - 16131060
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||||||||||||||||| |||||||||  |  |||||| |||||| |||||||||| |||||||    
T  16130995 aagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcataccttgagg 16131060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 22497421 - 22497312
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtg 282  Q
    ||||||||||||||  | | | ||||||||| ||||| || |||| |||||  ||||| |||||||||||||||| || | |||| || ||| ||||||     
T  22497421 cgatgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgtt 22497322  T
Q  283 gtgaaaagtg 292  Q
    ||||||||||    
T  22497321 gtgaaaagtg 22497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 22572036 - 22572136
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga 305  Q
    |||||||  |||||||| |||| ||||   ||||| | ||||||||||||| ||| ||||||||||||  | |||| ||| |||||||||||||||||||    
T  22572036 aaaggtggctgcaggcacgttagcactatgacgctcatgtcagtaatggaattga-aaagagtgtgtagaaggtgttgtgtaaagtgaatcatatcttga 22572134  T
Q  306 gg 307  Q
    ||    
T  22572135 gg 22572136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 23768195 - 23768271
Alignment:
Q  217 caggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||| ||| ||||| || ||| ||||||||||| ||||||| | | |||||||||||||||| ||| |||||||    
T  23768195 caggcatattagcactccaatgctcaagtcagtaattgaactgaaagatagtgtgtaagaagtgttgtggaaagtga 23768271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 31423894 - 31423836
Alignment:
Q  249 taatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    ||||| |||||||||||||| ||||  |||||| |||| ||||||||||| ||||||||    
T  31423894 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaatcatgtcttgagg 31423836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 12203683 - 12203622
Alignment:
Q  261 gaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttga-ggtgaagttaagtcac 321  Q
    |||||||| ||||  |||||| |||||||||||||||||  |||| ||||||||||||||||    
T  12203683 gaaagagtatgtagaaagtgttgtgaaaagtgaatcatactttgagggtgaagttaagtcac 12203622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 19331799 - 19331719
Alignment:
Q  187 gagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagag 267  Q
    |||||||||| || | | ||||||||| |||||| | ||||  ||||  ||||| ||||||||||||||||| ||||||||    
T  19331799 gagtcttcgcggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaagag 19331719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 22854 - 22964
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtg 282  Q
    ||||| ||||||||||| ||| ||||||||| ||| |||| |||| |||||  ||||| |||||||||||||||||||||||  |||||||||||||||     
T  22854 cgatgggtcttcgcagtgggacgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgtt 22953  T
Q  283 gtgaaaagtga 293  Q
    |||||||||||    
T  22954 gtgaaaagtga 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 11015 - 10928
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||| ||||||||| |||| ||||| |||||| |||||| |||||||||||| | |||||||||||||||||| |||||||||||    
T  11015 aaaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 9135462 - 9135360
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||||||||  ||||| |||| ||||| |||||| ||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  9135462 gaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatcataccttg 9135363  T
Q  305 agg 307  Q
    |||    
T  9135362 agg 9135360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 9868058 - 9867938
Alignment:
Q  187 gagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtga 286  Q
    |||||||||| || ||| |||||||||||||||| | |||| |||||  ||||| |||||||||||||||||||| |||||| ||||  |||||| || |    
T  9868058 gagtcttcgcggtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgtta 9867959  T
Q  287 aaagtgaatcatatcttgagg 307  Q
    ||||||||||||| |||||||    
T  9867958 aaagtgaatcataccttgagg 9867938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 7486535 - 7486628
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcat 298  Q
    |||||||||||||||||| |||| ||||| |||||| || |||||||||||||||||||||| ||||||  | |||| ||||||||||||||||    
T  7486535 gaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtgaatcat 7486628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 16987226 - 16987105
Alignment:
Q  172 tggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtg 271  Q
    |||||||| | | |||||||||||| || | | ||||||||||||| |||| |||| |||||  || || ||| ||||||||||| ||||||||||||||    
T  16987226 tggtacggcggcaatgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtg 16987127  T
Q  272 taagaagtgtggtgaaaagtga 293  Q
    |||||||||| |||||||||||    
T  16987126 taagaagtgttgtgaaaagtga 16987105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 39879377 - 39879470
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcat 298  Q
    ||||||||| ||||| || |||||||||  |||||| |||||||||||| |||||||||||||||||||| |||||| || |||||||||||||    
T  39879377 gaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtgaatcat 39879470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 299
Target Start/End: Original strand, 21161158 - 21161325
Alignment:
Q  131 cagtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaaca 230  Q
    |||||| |||| ||||||||||| | ||||||||  || | ||| |||| || ||||||||||||| || | | ||||| ||  |||||||| |||| ||    
T  21161158 cagtgaggatggatgagaggcaatgttggcagaatatgctctggaacggggaagatgagtcttcgcggtggaacgaaag-tgtctgcaggcacgttagca 21161256  T
Q  231 ctcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    ||| |||||| |||||||||||||| || |||||| |||||||  |||||| |||||||||||||||||    
T  21161257 ctccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaagtgaatcata 21161325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 5863145 - 5863279
Alignment:
Q  173 ggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgt 272  Q
    ||||||||  |||||||||||| | |||| | ||||  ||| |||| ||| |||| ||||| |||||| ||||||||||| |||||||||||||||||||    
T  5863145 ggtacggtagcgatgagtcttcacggtagaacgaaatttgcgtgcaagcacgttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgt 5863244  T
Q  273 aagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |  || ||| || |||||||||||||| |||||||    
T  5863245 agaaaatgttgtaaaaagtgaatcataccttgagg 5863279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 13292246 - 13292136
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtg 282  Q
    |||||||||||||  || | | ||||||||  |||||| | |||| ||||| |||||| |||||||||||| |||||| ||||||||||||||||||||     
T  13292246 cgatgagtcttcgtggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgtt 13292147  T
Q  283 gtgaaaagtga 293  Q
    |||||||||||    
T  13292146 gtgaaaagtga 13292136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 12644751 - 12644866
Alignment:
Q  181 gacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtg 280  Q
    |||||||||||||| | || | | |||||||||||||||||| |||| |||||  ||||| | ||||||||||||||||||||| |||||||   |||||    
T  12644751 gacgatgagtcttcacggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtg 12644850  T
Q  281 -tggtgaaaagtgaat 295  Q
     |||||||||||||||    
T  12644851 ttggtgaaaagtgaat 12644866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 26763012 - 26762910
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||||| | |||||||| |||| ||||| |||||| |||||||||| |||||| | ||| ||||||||  |||||| ||||||||||||||||| ||||    
T  26763012 gaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatcataccttg 26762913  T
Q  305 agg 307  Q
    |||    
T  26762912 agg 26762910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 10287696 - 10287609
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||||| | |||||||| |||| |||   |||||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  10287696 aaaggttcctgcaggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaagtga 10287609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 29373436 - 29373538
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||||||||||||||||||||  |||| || ||| ||||||||  || || ||||||||||||||||  || ||| ||||||| ||||||||| ||||    
T  29373436 gaaaggtgcatgcaggcatgttaggactccaatgctcaagtcagttgtgtaattgagaaagagtgtgtagaaaatgttgtgaaaattgaatcataccttg 29373535  T
Q  305 agg 307  Q
    |||    
T  29373536 agg 29373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 321
Target Start/End: Complemental strand, 9573523 - 9573411
Alignment:
Q  209 ggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatctt-gagg 307  Q
    ||||| |||||||| |||| ||||| |||||  |||||| ||  ||||||||||||||||||||||||||||||| ||||  |||||||||  || ||||    
T  9573523 ggtgcctgcaggcacgttagcactccaacgcacaagtcaatatgggaactgagaaagagtgtgtaagaagtgtgg-gaaacatgaatcatacattggagg 9573425  T
Q  308 tgaagttaagtcac 321  Q
    ||||| ||||||||    
T  9573424 tgaagctaagtcac 9573411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 5925576 - 5925489
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtg 292  Q
    ||||||||  |||||||| |||| ||||| |||| | ||||||||||||||||||||| |||  || |||||||||| ||||||||||    
T  5925576 gaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgtcgtgaaaagtg 5925489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 34854243 - 34854321
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| || |||| |||||  ||||| |||| ||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  34854243 tgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtga 34854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 5929088 - 5929024
Alignment:
Q  229 cactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| ||| || ||||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  5929088 cactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtga 5929024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 25173832 - 25173905
Alignment:
Q  147 gaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcagg 220  Q
    ||||||||||||| |||||||| | |  ||||||| ||||||||||| | ||| ||| ||||||||||||||||    
T  25173832 gaggcaacgatggaagaaagtgctcttatacggtggcgatgagtctttggagtgggacgaaaggtgcatgcagg 25173905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 1979052 - 1979139
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtg 292  Q
    ||||||||| |||| ||| ||||  ||||  ||||| ||||||||||||||||||||| |||  || |||||||||| ||||| ||||    
T  1979052 gaaaggtgcctgcaagcacgttagtactctgacgctcaagtcagtaatggaactgagagagaaagtctaagaagtgttgtgaagagtg 1979139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 18773971 - 18774058
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtg 292  Q
    |||||||||||||||||| |||| ||||   ||| | || |||||||||||||||||| |||  ||  ||||||||| ||||||||||    
T  18773971 gaaaggtgcatgcaggcacgttagcacttcgacgatcaaatcagtaatggaactgagagagaaagtcaaagaagtgtagtgaaaagtg 18774058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 12251956 - 12252066
Alignment:
Q  183 cgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtg 282  Q
    ||||||||||||||| |||||  |||||||||||||||||||||| |||||  || || |||||||||| | || |||||||||||||||||||| |||     
T  12251956 cgatgagtcttcgcaataggacaaaaggtgcatgcaggcatgttagcactctgacactcaagtcagtaacgaaaatgagaaagagtgtgtaagaattgtt 12252055  T
Q  283 gtgaaaagtga 293  Q
    |||||||||||    
T  12252056 gtgaaaagtga 12252066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 9801215 - 9801083
Alignment:
Q  174 gtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    ||||||||||||  |||||||||||| | | ||||||||| |||| ||| |||| ||||| ||| || ||||||||||| |||| |||||||||||||||    
T  9801215 gtacggtgacgaaaagtcttcgcagtggaacgaaaggtgcctgcaagcacgttagcactc-aacactcaagtcagtaatagaacagagaaagagtgtgta 9801117  T
Q  274 agaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
      |||||| ||||||||||||||||| |||||||    
T  9801116 gaaagtgttgtgaaaagtgaatcataccttgagg 9801083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 17143837 - 17143751
Alignment:
Q  218 aggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    ||||| |||| |||||  ||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||    
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttg 17143751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 28715551 - 28715487
Alignment:
Q  243 agtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaatcataccttgagg 28715487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 21342405 - 21342294
Alignment:
Q  188 agtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaa 287  Q
    ||||||| | || ||| |||||||  ||||||||| ||||||| |  |||||| ||||||||||||||||||| ||||||||| ||  |||||| |||||    
T  21342405 agtcttcacggtgggacgaaaggtatatgcaggcacgttaacagtacaacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaa 21342306  T
Q  288 aagtgaatcata 299  Q
    ||||||||||||    
T  21342305 aagtgaatcata 21342294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 30606931 - 30607020
Alignment:
Q  218 aggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||| || || |||||| ||||||||||||||| |||||||||||| |||  |||||| ||||||||||||| ||| |||||||    
T  30606931 aggcatgttagcattccaacgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttgagg 30607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 12516175 - 12516263
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||||| ||||| || |||| |||||  ||||| |||| |||||||||||||||||||| ||||||| |||||| |||||||||||    
T  12516175 gaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtga 12516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 307
Target Start/End: Complemental strand, 8123047 - 8122914
Alignment:
Q  173 ggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgt 272  Q
    |||||||||||||||||||||| | |||  | |||||||| ||||||||| |||| ||||| |||||| |||||||||||| || ||| ||| | | |||    
T  8123047 ggtacggtgacgatgagtcttcacggtaaaatgaaaggtgtatgcaggcacgttagcactccaacgctcaagtcagtaatgaaattga-aaaaactatgt 8122949  T
Q  273 aagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
       ||| || ||||||||||||||||| |||||||    
T  8122948 cgaaagcgttgtgaaaagtgaatcataccttgagg 8122914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 16704422 - 16704494
Alignment:
Q  235 aacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||| ||||||||||||||  |||||||||| |||||  |||||| ||||||||||||||||| |||||||    
T  16704422 aacgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgagg 16704494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 6129379 - 6129481
Alignment:
Q  148 aggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtca 247  Q
    ||||||| ||||| |||||| ||||| |||| || ||||||||||||  |  |||| |||||||||||||| |||||||| ||||| |||| | ||||||    
T  6129379 aggcaacaatggccgaaagtcttttgatacgatggcgatgagtcttcatatcaggacgaaaggtgcatgcacgcatgttagcactccaacgtttaagtca 6129478  T
Q  248 gta 250  Q
    |||    
T  6129479 gta 6129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 12108385 - 12108475
Alignment:
Q  181 gacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtg 271  Q
    ||||||||||| |||  || | | |||||||||||||| |||||||| |||||  ||||| |||| |||||||||||||||||||| ||||    
T  12108385 gacgatgagtcctcgtggtggaatgaaaggtgcatgcatgcatgttaccactccgacgctcaagttagtaatggaactgagaaagaatgtg 12108475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 307
Target Start/End: Complemental strand, 28723951 - 28723773
Alignment:
Q  129 ttcagtgaagatgaatgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaa 228  Q
    |||||||| |||| |||||||| |||  || |  ||||||||  ||||||||| | |||||||||||| || | | |||| ||||    ||||| |||      
T  28723951 ttcagtgaggatggatgagaggtaacagtgacgaaaagtgttccggtacggtggcaatgagtcttcgcggtggaacgaaatgtgctaataggcacgttgg 28723852  T
Q  229 cactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    || || |||||| |||||| |||||||||| ||||||||||||||  || ||| |||||||||||||| ||||| ||||    
T  28723851 caatccaacgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaatcgtatctggagg 28723773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 12731623 - 12731574
Alignment:
Q  244 gtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||| |||||||||||||||||||||| |||||||||| |||||||||||    
T  12731623 gtcattaatggaactgagaaagagtgtataagaagtgttgtgaaaagtga 12731574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 1770815 - 1770903
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||||  |||| ||||||||  ||||  ||||| |||| ||||||||||||||| |||||||||||  |||||| |||||||||||    
T  1770815 gaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 9781567 - 9781519
Alignment:
Q  245 tcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||    
T  9781567 tcagtaatgtaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 9781519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 14860160 - 14860112
Alignment:
Q  245 tcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  14860160 tcagtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagtga 14860112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 21649375 - 21649471
Alignment:
Q  177 cggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    ||||| |||||||||||||| || | | ||||||||| |||| ||| |||| ||| | |||| | ||||||||||||||||||||| ||| ||||||    
T  21649375 cggtggcgatgagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtcagtaatggaactgagagagaatgtgta 21649471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 431436 - 431327
Alignment:
Q  186 tgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtg 285  Q
    ||||||||||| || | ||||||||||| | ||| || |||| ||||   ||||| |||||| ||||||||||||||||||||| ||   |||||  |||    
T  431436 tgagtcttcgcggtggaaagaaaggtgcctacagacacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtg 431337  T
Q  286 aaaagtgaat 295  Q
    ||||||||||    
T  431336 aaaagtgaat 431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 2311997 - 2311833
Alignment:
Q  143 atgagaggcaacgatggcagaaagtgttttggtacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaa 242  Q
    ||||||||||||  ||||  |||||| |  ||||||||| ||| |||||||||  || | | ||||||||  |||||  | |||| ||||| |||||| |    
T  2311997 atgagaggcaacagtggcgcaaagtgctccggtacggtggcgaagagtcttcgtggtggaatgaaaggtgtctgcagatacgttagcactccaacgctca 2311898  T
Q  243 agtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    | |||| || |||  ||||||||| ||||||  |||||| |||||| |||||||||| |||||||    
T  2311897 aatcagcaagggatttgagaaagaatgtgtagaaagtgttgtgaaaggtgaatcataccttgagg 2311833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 13085164 - 13085073
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgag 306  Q
    ||||||||||| | || || |||||| |||||| ||||| |||||||||||| | ||||  |||| | ||||||||||||||| | ||||||    
T  13085164 tgcaggcatgtaagcattccaacgctcaagtcaataatgaaactgagaaagaatatgtagaaagtattgtgaaaagtgaatcaaaccttgag 13085073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 25495965 - 25496001
Alignment:
Q  242 aagtcagtaatggaactgagaaagagtgtgtaagaag 278  Q
    |||||||||||  ||||||||||||||||||||||||    
T  25495965 aagtcagtaatcaaactgagaaagagtgtgtaagaag 25496001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 7845 - 7969
Alignment:
Q  175 tacggtgacgatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaa 274  Q
    ||||||| |||||||||||| | || | | |||||||||||| ||||| |||| ||||| |||||| || ||||||||| || ||||||||||||||||     
T  7845 tacggtggcgatgagtcttcacggtggaaggaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtag 7944  T
Q  275 gaagtgtggtgaaaagtgaatcata 299  Q
     |||||| |||||||||||||||||    
T  7945 aaagtgttgtgaaaagtgaatcata 7969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 313 - 256
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  313 acgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 13912 - 14014
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||||||||| | ||| ||||  |||| || ||| |||||||||||| |||||||||||||||||||  |||||| |||| |||||||||||| ||||    
T  13912 gaaaggtgcatgaatgcacgttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttg 14011  T
Q  305 agg 307  Q
    |||    
T  14012 agg 14014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 95910 - 95817
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    |||||| | |||||||| |||| ||||  |||||| |||| ||||||||||||||||||||||| |||  |||||| |||||||||||||||||    
T  95910 aaaggttcctgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaatcata 95817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 215272 - 215349
Alignment:
Q  215 tgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtg 292  Q
    |||||||| |||| || || |||||| |||||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  215272 tgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 15493 - 15429
Alignment:
Q  243 agtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||||||||||||||||||||||| | ||  |||||| ||||||||||||||||| |||||||    
T  15493 agtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgagg 15429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 8647 - 8584
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    ||||| |||||||||||| |||||| ||| ||||||||  |||||| |||||||||||||||||    
T  8647 acgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtgaatcata 8584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 40786 - 40874
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    |||||| ||||||||||| |||| ||||| |||||| |||||||| |||||||||| | |||| ||||| |||||||  ||||||||||    
T  40786 gaaaggcgcatgcaggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtga 40874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 29398 - 29286
Alignment:
Q  184 gatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtgg 283  Q
    ||||||||||||| || | | |||||||||||| || ||||||| ||||| |||||| |||||||||||| || | || ||||  |||||  |||||| |    
T  29398 gatgagtcttcgcggtggaacgaaaggtgcatggagtcatgttagcactccaacgctcaagtcagtaatgaaaataaggaaga--gtgtagaaagtgttg 29301  T
Q  284 tgaaaagtgaatcat 298  Q
    |||||||||||||||    
T  29300 tgaaaagtgaatcat 29286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 68892 - 68801
Alignment:
Q  214 atgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttgagg 307  Q
    |||||| || |||| ||||| |||||| |||| ||||||||||||||||||||  || ||  |||||| ||||||||||||||||| |||||||    
T  68892 atgcagacacgttagcactccaacgctcaagttagtaatggaactgagaaaga--gtatagaaagtgttgtgaaaagtgaatcataccttgagg 68801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 6930 - 6873
Alignment:
Q  236 acgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtga 293  Q
    ||||| ||||||||| || ||||||||| ||||||||||||||||| |||||||||||    
T  6930 acgctcaagtcagtattgaaactgagaacgagtgtgtaagaagtgttgtgaaaagtga 6873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 6289 - 6389
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacact-cgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcatatcttg 304  Q
    |||||||  |||||||| |||| |||| |||| ||| ||||||||||||||||||||||| ||||||||  |||||| ||||||||||| || || ||||    
T  6289 aaaggtgtttgcaggcacgttagcacttcgaa-gctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcgtaccttg 6387  T
Q  305 ag 306  Q
    ||    
T  6388 ag 6389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 35243 - 35337
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtg-aaaagtgaatcat 298  Q
    |||| |||| |||||||| |||| |||||  || || |||||||||| ||||||||||||||||||||   |||||| ||| |||||||||||||    
T  35243 gaaatgtgcttgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaaagtgaatcat 35337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 73902 - 73809
Alignment:
Q  206 aaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgtggtgaaaagtgaatcata 299  Q
    |||||||||| ||||||||||| |||||  ||||| || | |||||||||  ||| |||||||| |||  |||||| ||||||||| |||||||    
T  73902 aaaggtgcattcaggcatgttagcactctgacgctcaaattagtaatggatttgaaaaagagtgcgtagaaagtgttgtgaaaagtaaatcata 73809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 10840 - 10756
Alignment:
Q  184 gatgagtcttcgcagtaggaagaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagt 268  Q
    ||||||||||||  || | | ||||||||  || |||||||||| |||||  ||| | |||||||||||||||||||||||||||    
T  10840 gatgagtcttcgtggtggaatgaaaggtgtctgtaggcatgttagcactccgacgttcaagtcagtaatggaactgagaaagagt 10756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 20582 - 20530
Alignment:
Q  221 catgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgta 273  Q
    ||||||| |||||  ||||| |||||| ||| |||||||||||||||||||||    
T  20582 catgttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgta 20530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 4525 - 4449
Alignment:
Q  205 gaaaggtgcatgcaggcatgttaacactcgaacgctaaagtcagtaatggaactgagaaagagtgtgtaagaagtgt 281  Q
    ||||||||  |||| ||| |||| ||||| |||||| |||||| ||||| |||||| | |||| |||||||||||||    
T  4525 gaaaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactgaaagagagagtgtaagaagtgt 4449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University