View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_32 (Length: 339)
Name: NF20721_low_32
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 130281 - 130592
Alignment:
| Q |
10 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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| T |
130281 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
130380 |
T |
|
| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
209 |
Q |
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| T |
130381 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
130480 |
T |
|
| Q |
210 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
130481 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatctattaggactttcttgcatatagcaggtgcaatgacaatg |
130580 |
T |
|
| Q |
310 |
atgcttggactt |
321 |
Q |
| |
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|||||||||||| |
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| T |
130581 |
atgcttggactt |
130592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 150114 - 150425
Alignment:
| Q |
10 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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| T |
150114 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
150213 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
209 |
Q |
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| T |
150214 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaa |
150313 |
T |
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| Q |
210 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatg |
309 |
Q |
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|||||| | ||| |||| ||| | ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
150314 |
cttactttttgctagttcagtggcagcttttggataaccaattttaaaggtcacttcatcaattaagactttcttgcatatagcaggtgcaatgacaatg |
150413 |
T |
|
| Q |
310 |
atgcttggactt |
321 |
Q |
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|||||||||||| |
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| T |
150414 |
atgcttggactt |
150425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 10304485 - 10304346
Alignment:
| Q |
10 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||| || || |||||||||| ||||||||||| |
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| T |
10304485 |
aagaaaatgtgaatgatgaatttaaaagaagcttttctcatctccacgaggaactcaacagggtgtttcatactggataattcttctaacttgttgatca |
10304386 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacatt |
149 |
Q |
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||||||| |||||||| |||||||| || |||||||||| |
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| T |
10304385 |
caatatcttcaatacgttctaagtattttactaatacatt |
10304346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 10304258 - 10304174
Alignment:
| Q |
237 |
ttttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatgatgcttggactt |
321 |
Q |
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||||||||||||| |||||| | || |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10304258 |
ttttggataaccatgcttaaagtttacatcatcaatcagaactttcttgcatatatcaggtgcaatgacaatgatgcttggactt |
10304174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 892474 - 892416
Alignment:
| Q |
58 |
aggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatc |
116 |
Q |
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|||||||||| |||||||| |||| | || ||||||||||||||||||||||||||||| |
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| T |
892474 |
aggaactcaagagggtgttccatgatggataattcttctagcttgttgatcacaatatc |
892416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 318
Target Start/End: Original strand, 3959369 - 3959645
Alignment:
| Q |
42 |
tttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatcctcaatacgctctaagtacatttct |
141 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
3959369 |
tttcctcatctctttaagaaactcaacagggtgtttcatgctagacaattcttcaagcttgttgatcacaatatcctcaatacgctctagatacattgtt |
3959468 |
T |
|
| Q |
142 |
aatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaatcttactatcgcctaattcaagggcggattttg |
241 |
Q |
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||||||||| ||| ||||||| | |||||| |||| ||||||||| |||| |||| ||| | | || | | ||| | || | || ||||| |
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| T |
3959469 |
gatacattgttaccggcaataggagccgtgactagtcgttttaaacgtccgtgttcattatttagtaccctattgtatgctagtacagtgatggcttttg |
3959568 |
T |
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| Q |
242 |
gataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaatgacaatgatgcttgga |
318 |
Q |
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||||||||| |||||| || ||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||| |
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| T |
3959569 |
gataaccaagcttaaaggttacttcatcatttaggactttcttgcacatagctggtacaatgacaatgatgcttgga |
3959645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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