View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_34 (Length: 336)
Name: NF20721_low_34
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 28749122 - 28748814
Alignment:
| Q |
18 |
tatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28749122 |
tatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcc |
28749023 |
T |
|
| Q |
118 |
tctcccacctacaatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataatt |
217 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28749022 |
tttcccacctacaatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcgcaggctatgtcataatt |
28748923 |
T |
|
| Q |
218 |
gcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28748922 |
gcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgca |
28748823 |
T |
|
| Q |
318 |
atgcctatg |
326 |
Q |
| |
|
||||||||| |
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|
| T |
28748822 |
atgcctatg |
28748814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 28753135 - 28752827
Alignment:
| Q |
18 |
tatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28753135 |
tatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcc |
28753036 |
T |
|
| Q |
118 |
tctcccacctacaatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataatt |
217 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28753035 |
tttcccacctacaatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcgcaggctatgtcataatt |
28752936 |
T |
|
| Q |
218 |
gcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgca |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752935 |
gcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgca |
28752836 |
T |
|
| Q |
318 |
atgcctatg |
326 |
Q |
| |
|
||||||||| |
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|
| T |
28752835 |
atgcctatg |
28752827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 28739171 - 28738865
Alignment:
| Q |
18 |
tatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcc |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| || | || |||||||| |||||||||| | ||||| | || |||||||||||||||| |
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|
| T |
28739171 |
tatacaactttgtgaaagttcttagcacaactcttataggtatgtacaagcaatggaacaaaaaagacaaaggagcagagtctaatgatccaaatgctcc |
28739072 |
T |
|
| Q |
118 |
tctcccacctacaatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataatt |
217 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
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|
| T |
28739071 |
tctccaacctacactttcatttgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcctggttttctatcgcaggctatgtcataatt |
28738972 |
T |
|
| Q |
218 |
gcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgca |
317 |
Q |
| |
|
| ||||| ||||| ||||| || || |||||||| |||||| ||||||||||| || |||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
28738971 |
ggtataatttcaataattaccataccccacatttttcaccagataaagtggtatcacgtcattttgatttacatcattgcacccgcactagccttttgca |
28738872 |
T |
|
| Q |
318 |
atgccta |
324 |
Q |
| |
|
||||||| |
|
|
| T |
28738871 |
atgccta |
28738865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 39943774 - 39944082
Alignment:
| Q |
18 |
tatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||| | ||||||| |||| |||||||||||||| |
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|
| T |
39943774 |
tatacaactttgtgaaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaagacaaaggagcacagtctgaggatccaaatgctcc |
39943873 |
T |
|
| Q |
118 |
tctcccacctacaatttcattcgacgacaagtgcagaaccgagatgttcctcaaagatcaaatcccctcatggttcgcaatcacaggctatgtcataatt |
217 |
Q |
| |
|
||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
39943874 |
tctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccctcctggtttgctatcgcaggctatgtcataatt |
39943973 |
T |
|
| Q |
218 |
gcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttacatcattgcacccgcattagccttttgca |
317 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
39943974 |
gcaataatctcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcatttgtatttacatcattgcacccgcactagccttttgca |
39944073 |
T |
|
| Q |
318 |
atgcctatg |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
39944074 |
atgcctatg |
39944082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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