View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_35 (Length: 336)
Name: NF20721_low_35
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 39788313 - 39788126
Alignment:
| Q |
2 |
aatcgaatttagacttttcattatatctgagtcgattaaaataaaaactgcaaatcacacaaggattaagagtttgtccaagaggtgtcagctctgtagt |
101 |
Q |
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| T |
39788313 |
aatcaaatttagacttgtcattatatctgaatcgattaaaataaaaactgcaaatcacacaaggattaagagtttgtccaagaggtgtcagctctgtagt |
39788214 |
T |
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| Q |
102 |
gagaacttggtcttataatatcaacagatgaactccaagtctcgttggataggattgtaaaatactcattagtatcgcttaaattact |
189 |
Q |
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| T |
39788213 |
gagaacttggtcttataatatcaacagatgaactccaaatctcgttggataggattgtaaaatactcattagtatcgcttaaattact |
39788126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 39787839 - 39787741
Alignment:
| Q |
238 |
ctggccacctcaaaatcaatacaagccaaactaaacctttatttgaatatacttatttttatccacaatgcctagctcaattggtaaaatgtcgaaatt |
336 |
Q |
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| T |
39787839 |
ctggccacctcaaaatcaatacaagccaaactaaacctttatttgaatatacttatttttatccacaagtcctagctcaactggtaaaatgtcgaaatt |
39787741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 37771078 - 37771106
Alignment:
| Q |
308 |
cctagctcaattggtaaaatgtcgaaatt |
336 |
Q |
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| T |
37771078 |
cctagctcaattggtaaaatgtcgaaatt |
37771106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 11816895 - 11816867
Alignment:
| Q |
308 |
cctagctcaattggtaaaatgtcgaaatt |
336 |
Q |
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| T |
11816895 |
cctagctcaattggtaaaatgtcgaaatt |
11816867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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