View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_36 (Length: 335)
Name: NF20721_low_36
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 39064226 - 39064534
Alignment:
| Q |
19 |
taatcatcttgaatatgagactagaaataatcacagtataagatttcaaatatgtataattaacaattagtaaatttaaaattacatgaattatcatatt |
118 |
Q |
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| T |
39064226 |
taatcatcttgaatatgagactagaaataatcacagtataagatttcaaatatgtataattaacaattagtaaatttaaaattacatgaattatcatatt |
39064325 |
T |
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| Q |
119 |
ctagtacaattccattggcttctctttttctttccattctataaacctacatggtgaaaacctaaccttgtattctgtaatagtttcaagcttaggtgac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39064326 |
ctagtacaattccattggcttctctttttctttccattctatgaacctacatggtgaaaacctaaccttgtattctgtaatagtttcaagcttaggtgac |
39064425 |
T |
|
| Q |
219 |
caaacctgatccttagacttcacaagtgcttcataatgttttttcaactcaggagtactacaaaggaaaccgttgctataaggtgttccattattattca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39064426 |
caaacctgatccttagacttcacaagtgcttcataatgttttttcaactcaggagtactacaaaggaaaccgttgctataaggtgttccattattattca |
39064525 |
T |
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| Q |
319 |
tctcattgt |
327 |
Q |
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|||| |||| |
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| T |
39064526 |
tctctttgt |
39064534 |
T |
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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 15021046 - 15021135
Alignment:
| Q |
197 |
aatagtttcaagcttaggtgaccaaacctgatccttagacttcacaagtgcttcataatgttttttcaactcaggagtactacaaaggaa |
286 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15021046 |
aatagtttcaagcttaggagaccaaacctgatccttagacttcacaagcatttcataatgttttttcaactcaggagtactacaaaggaa |
15021135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 49160817 - 49160726
Alignment:
| Q |
197 |
aatagtttcaagcttaggtgaccaaacctgatccttagacttcacaagtgcttcataatgttttttcaactcaggagtactacaaaggaaac |
288 |
Q |
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|||||||||||||||||| |||||| ||||| | |||| |||||||| |||||||||||| |||||||||||||||| | ||||||||| |
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| T |
49160817 |
aatagtttcaagcttaggagaccaactctgattcatagatttcacaagcatttcataatgtttattcaactcaggagtaccaaaaaggaaac |
49160726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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