View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_low_38 (Length: 324)
Name: NF20721_low_38
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_38 |
 | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 58 - 318
Target Start/End: Complemental strand, 19332167 - 19331906
Alignment:
| Q |
58 |
cataatgaatggtatttttatgtataaagttagtaaagtgaatcaagctttataaatagttttcatattttcagcaggaagtctagcgttgttattgaga |
157 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19332167 |
catattgaatggtatttttatgtataaagttagtaaagtgaataaagctttataaatagttttcattttttcagcaggaagtctagcgttgttattgaga |
19332068 |
T |
|
| Q |
158 |
aataagaccgtcgtattatctcaagtttgcatggtgaagacttgtaacacatgcaacatgatactcattgttcaagtcacaactgatgcaataaaatctg |
257 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19332067 |
aataagaccgtcatattatctcaagtttccatggtgaagacttgtaacacatgcaacatgatactcattgttcaagtcacaactgatgcaataaaatctg |
19331968 |
T |
|
| Q |
258 |
gatctcctagggccaca-aaaattgttaagaacatagtttttgttgttttagcacttgctat |
318 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19331967 |
gatctcctagggccacaaaaaattgttaagaacatagtttttgttgttttagcacttgctat |
19331906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19332201 - 19332263
Alignment:
| Q |
1 |
acaagccaaaataaactatcatattgtgtaatttaaaaagatattaaatttgcagtacataat |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19332201 |
acaagccaaaataaactatcatattgtgtaatttaaaaagatattaaatttgcagtacataat |
19332263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 19340657 - 19340569
Alignment:
| Q |
190 |
ggtgaagacttgtaacacatgcaacatgatactcattgttcaagtcacaactgatgcaataaaatctggatctcctagggccacaaaaa |
278 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| ||||| ||| |||| ||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
19340657 |
ggtgaagccttgtaataaatgcaacatgatacttattgtgcaaatcaccactgatgttataaaccttggatctcataaggccacaaaaa |
19340569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 3720 - 3632
Alignment:
| Q |
190 |
ggtgaagacttgtaacacatgcaacatgatactcattgttcaagtcacaactgatgcaataaaatctggatctcctagggccacaaaaa |
278 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| ||||| ||| |||| ||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
3720 |
ggtgaagccttgtaataaatgcaacatgatacttattgtgcaaatcaccactgatgttataaaccttggatctcataaggccacaaaaa |
3632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University