View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_41 (Length: 286)
Name: NF20721_low_41
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 20473607 - 20473520
Alignment:
| Q |
185 |
agtaacgttgcaactcttgatacatcttttaatttttaaagcttaactataaggtaacccacaacacttggaggatacgttgaatttg |
272 |
Q |
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| T |
20473607 |
agtaacgctgcaactcttgatacatctttttatttttaaagcttaactataaggtaacccacaacacttggaggatacgttgaatttg |
20473520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 20474151 - 20474104
Alignment:
| Q |
15 |
attattcttcaagtgtttgcatcaaccattgtttctttatattttatt |
62 |
Q |
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| T |
20474151 |
attattcttcaagtgtttgcatcaaccattgtttctttgtcttttatt |
20474104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 15122082 - 15121992
Alignment:
| Q |
45 |
gtttctttatattttattcatatgtatgcctttgtaacagaaatacaagtattcatgttgtaacattgaagcttccatatatgtgttactt |
135 |
Q |
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| T |
15122082 |
gtttccttatattttctctatatggatgcctttgtaatagagataccagcgttcatgttgtaacatcgaaacttccatatttgtgtaactt |
15121992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 20473689 - 20473647
Alignment:
| Q |
100 |
tgttgtaacattgaagcttccatatatgtgttacttcacacaatc |
144 |
Q |
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| T |
20473689 |
tgttgtaacattgaagcttcc--atatgtgttacttcacacaatc |
20473647 |
T |
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