View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_low_43 (Length: 273)

Name: NF20721_low_43
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_low_43
NF20721_low_43
[»] chr4 (2 HSPs)
chr4 (63-215)||(38038353-38038528)
chr4 (1-64)||(54751813-54751876)
[»] chr5 (1 HSPs)
chr5 (1-63)||(30410814-30410876)
[»] chr8 (1 HSPs)
chr8 (1-64)||(18022246-18022309)
[»] chr3 (1 HSPs)
chr3 (1-64)||(9179901-9179964)
[»] chr2 (1 HSPs)
chr2 (31-64)||(3925839-3925872)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 38038353 - 38038528
Alignment:
Q  63 tcactttgggacactcgcatttagaacgctgcttaaatgtaataatcttg--------------------tttgtttgtttaggttttgcttagggaaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||    
T  38038353 tcactttgggacactcgcatttagaacgctgcttaaatgtaataatcttgttgtagcttcttctgacttgtttgtttgtttaggttttgcttagggaaaa 38038452  T
Q  143 tcagtttcttgctgtgtcccctttccctg---gtagtagtactatgttttcttatgtgactcaaaatcttgttgtt 215  Q
    ||| |||||||||||||||||||||||||   ||||||||| |||||||||||||||||||| | |||||||||||    
T  38038453 tcactttcttgctgtgtcccctttccctggtagtagtagtagtatgttttcttatgtgactcgatatcttgttgtt 38038528  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 54751813 - 54751876
Alignment:
Q  1 cgccgctcgccgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54751813 cgccgctcgccgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 54751876  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30410876 - 30410814
Alignment:
Q  1 cgccgctcgccgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggttt 63  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30410876 cgccgctcaccgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggttt 30410814  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18022246 - 18022309
Alignment:
Q  1 cgccgctcgccgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 64  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18022246 cgccgctcgcctctcattctctgccgctcgccgctcgctcaactccgattaacctttaggtttc 18022309  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9179964 - 9179901
Alignment:
Q  1 cgccgctcgccgctcattctctgccgctcgccgctcgctcaactccgattaaccttcaggtttc 64  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9179964 cgccgctcgcctctcattctctaccgctcgccgctcgctcaactccgattaaccttcaggtttc 9179901  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 3925839 - 3925872
Alignment:
Q  31 ccgctcgctcaactccgattaaccttcaggtttc 64  Q
    ||||||||||||||||||||||||||||||||||    
T  3925839 ccgctcgctcaactccgattaaccttcaggtttc 3925872  T

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