View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_44 (Length: 270)
Name: NF20721_low_44
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_44 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 15558441 - 15558711
Alignment:
| Q |
1 |
ataatagaaaaagaaaccataacaaacttatgagtgatagttgcacagatcacatatatagtgcagtacaaaggatatgaactgcaaaataaatttgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15558441 |
ataatagaaaaagaaaccataacaaacttatgagtgatagttgcacggatcacatgtatagtgcagtacaaaggatatgaactgcaaaataaatttgttt |
15558540 |
T |
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| Q |
101 |
tcaccagtaaaagatatcaatatgcaac-tnnnnnnnttagttattttggtgacaattacacataacaaatctatcaatgaagtgaattatattttcctt |
199 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15558541 |
tcaccagtaaaagatatcaatatgcaacataaaaaaattagttattttggtgacaattacacattacaaatctatcaatgaagtgaattatattttcctt |
15558640 |
T |
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| Q |
200 |
caaagtttaaatttatggaactcacagttttccaggatttggaataaatatcctcaattctctaactgtat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15558641 |
caaagtttaaatttatggaactcacagttttccaggatttggaataaatatcctcaattctctaactgtat |
15558711 |
T |
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