View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_low_46 (Length: 266)

Name: NF20721_low_46
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_low_46
NF20721_low_46
[»] chr7 (5 HSPs)
chr7 (1-247)||(3649313-3649551)
chr7 (3-69)||(3641214-3641280)
chr7 (3-68)||(3657601-3657666)
chr7 (5-79)||(3647024-3647098)
chr7 (150-198)||(3657482-3657530)
[»] chr1 (11 HSPs)
chr1 (11-77)||(42217270-42217336)
chr1 (4-68)||(42409606-42409670)
chr1 (4-74)||(42202420-42202490)
chr1 (4-74)||(42211288-42211358)
chr1 (20-74)||(45316458-45316512)
chr1 (11-74)||(2176354-2176417)
chr1 (11-74)||(45151996-45152059)
chr1 (20-74)||(10542395-10542449)
chr1 (20-68)||(42417650-42417698)
chr1 (20-79)||(43014373-43014432)
chr1 (20-69)||(51795025-51795074)
[»] chr5 (13 HSPs)
chr5 (1-80)||(10109298-10109377)
chr5 (1-74)||(10212312-10212385)
chr5 (1-68)||(10102813-10102880)
chr5 (20-74)||(10105891-10105945)
chr5 (2-79)||(10209762-10209839)
chr5 (25-77)||(12104608-12104660)
chr5 (20-66)||(13856027-13856073)
chr5 (1-65)||(12109378-12109442)
chr5 (1-76)||(9660267-9660342)
chr5 (20-69)||(9674769-9674818)
chr5 (22-74)||(37278735-37278787)
chr5 (20-49)||(3467669-3467698)
chr5 (20-68)||(10215930-10215978)
[»] chr3 (2 HSPs)
chr3 (10-77)||(46446214-46446281)
chr3 (20-79)||(21884103-21884162)
[»] chr8 (4 HSPs)
chr8 (1-79)||(31555157-31555235)
chr8 (1-79)||(31878234-31878312)
chr8 (20-77)||(31558261-31558318)
chr8 (23-69)||(13568429-13568475)
[»] chr4 (7 HSPs)
chr4 (4-73)||(46362530-46362599)
chr4 (20-74)||(17889425-17889479)
chr4 (20-53)||(36790859-36790892)
chr4 (20-53)||(49588201-49588234)
chr4 (20-68)||(25698817-25698865)
chr4 (23-62)||(20918686-20918725)
chr4 (14-46)||(33156193-33156225)
[»] chr6 (1 HSPs)
chr6 (20-57)||(33891612-33891649)
[»] chr2 (3 HSPs)
chr2 (20-68)||(26568347-26568395)
chr2 (20-53)||(5900549-5900582)
chr2 (20-50)||(43633450-43633480)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3649551 - 3649313
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgatcataaattggtaaattggaga 100  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||         |||    
T  3649551 aattgtgatgctaacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacaactccgtgattataaattga--------aga 3649460  T
Q  101 gatgttttccttttatatatgagcagattagtttcacttatgctctagtcgatgtgggacttaagtctgaacatagacaattagacatcaaatcactttt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||||||||||||||     
T  3649459 gatgttttccttttatatatgagcagcttagtttcacttatgcgctagccaatgtgggacttaagtcagaacatagacaattagacatcaaatcacttta 3649360  T
Q  201 tgtagaactatttcaatttactctcgaagaagtgctggtggaggatc 247  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  3649359 tgtagaactatttcaatctactctcgaagaagtgctggtggaggatc 3649313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 3641280 - 3641214
Alignment:
Q  3 ttgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 69  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3641280 ttgtgacgctgatacagtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 3641214  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 3657666 - 3657601
Alignment:
Q  3 ttgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3657666 ttgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 3647098 - 3647024
Alignment:
Q  5 gtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 79  Q
    |||| ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  3647098 gtgacgctgacacggtattctttagtaaaaggcgaaagaatagtttgctatgtcatcatcacacggctccgtgat 3647024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 3657530 - 3657482
Alignment:
Q  150 cgatgtgggacttaagtctgaacatagacaattagacatcaaatcactt 198  Q
    ||||||||||||| |||| ||||||||||| ||||||| | ||||||||    
T  3657530 cgatgtgggactttagtcagaacatagacagttagacacccaatcactt 3657482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 42217270 - 42217336
Alignment:
Q  11 ctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 77  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  42217270 ctgacacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatg 42217336  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 42409670 - 42409606
Alignment:
Q  4 tgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409670 tgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 42409606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 42202420 - 42202490
Alignment:
Q  4 tgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  42202420 tgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctcc 42202490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 42211288 - 42211358
Alignment:
Q  4 tgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  42211288 tgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctcc 42211358  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 45316458 - 45316512
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45316458 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggctcc 45316512  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 2176354 - 2176417
Alignment:
Q  11 ctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  2176354 ctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtctcc 2176417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 45152059 - 45151996
Alignment:
Q  11 ctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  45152059 ctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacggctcc 45151996  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 10542449 - 10542395
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10542449 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 10542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 42417698 - 42417650
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42417698 tattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacac 42417650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 43014373 - 43014432
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 79  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  43014373 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 43014432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 51795074 - 51795025
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 69  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacg 51795025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10109377 - 10109298
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgatc 80  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  10109377 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatc 10109298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10212312 - 10212385
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10212312 aattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 10212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10102880 - 10102813
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10102880 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacac 10102813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 10105945 - 10105891
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10105945 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 10105891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 10209762 - 10209839
Alignment:
Q  2 attgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 79  Q
    ||||||| ||| ||||  ||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  10209762 attgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgat 10209839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 12104608 - 12104660
Alignment:
Q  25 tttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 77  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 12104660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 13856073 - 13856027
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcac 66  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  13856073 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcac 13856027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12109378 - 12109442
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatca 65  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||| ||||||| |||||||    
T  12109378 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatca 12109442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9660267 - 9660342
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccat 76  Q
    |||||||| | | ||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||| | ||||||    
T  9660267 aattgtgacgttcacacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggctccat 9660342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 9674769 - 9674818
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 69  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  9674769 tattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacg 9674818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 37278735 - 37278787
Alignment:
Q  22 ttctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||| ||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctcc 37278787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 3467669 - 3467698
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagtt 49  Q
    ||||||||||||||||||||||||||||||    
T  3467669 tattctttagtaaaaggcgaaagaatagtt 3467698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 10215930 - 10215978
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    |||||||||||||||||| |||||||||||  |||||| |||| |||||    
T  10215930 tattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacac 10215978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 46446281 - 46446214
Alignment:
Q  10 gctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 77  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  46446281 gctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctccatg 46446214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 21884103 - 21884162
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 79  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||    
T  21884103 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 21884162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 31555157 - 31555235
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 79  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  31555157 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgat 31555235  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 31878312 - 31878234
Alignment:
Q  1 aattgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatgat 79  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  31878312 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgat 31878234  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 31558261 - 31558318
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactccatg 77  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  31558261 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 31558318  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 13568429 - 13568475
Alignment:
Q  23 tctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacg 69  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacg 13568475  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 46362530 - 46362599
Alignment:
Q  4 tgtgatgctgacacattattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactc 73  Q
    |||||||||||||   ||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  46362530 tgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgtcatcattacacgactc 46362599  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 17889479 - 17889425
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacgactcc 74  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  17889479 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 17889425  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 36790892 - 36790859
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgct 53  Q
    ||||||||||||||||||||||||||||||||||    
T  36790892 tattctttagtaaaaggcgaaagaatagttcgct 36790859  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 49588201 - 49588234
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgct 53  Q
    ||||||||||||||||||||||||||||||||||    
T  49588201 tattctttagtaaaaggcgaaagaatagttcgct 49588234  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 25698865 - 25698817
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    ||||||||| ||||||||||||||||||| | |||||| ||||||||||    
T  25698865 tattctttaataaaaggcgaaagaatagtccactatgtgatcatcacac 25698817  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 20918725 - 20918686
Alignment:
Q  23 tctttagtaaaaggcgaaagaatagttcgctatgtcatca 62  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatca 20918686  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 33156193 - 33156225
Alignment:
Q  14 acacattattctttagtaaaaggcgaaagaata 46  Q
    ||||||||||||||||||||| |||||||||||    
T  33156193 acacattattctttagtaaaatgcgaaagaata 33156225  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33891649 - 33891612
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgt 57  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33891649 tattctttagtaaaaggcgaaagaatagttcgctatgt 33891612  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 26568395 - 26568347
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 68  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||    
T  26568395 tattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacac 26568347  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 5900582 - 5900549
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttcgct 53  Q
    ||||||||||||||||||||||||||||||||||    
T  5900582 tattctttagtaaaaggcgaaagaatagttcgct 5900549  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 43633450 - 43633480
Alignment:
Q  20 tattctttagtaaaaggcgaaagaatagttc 50  Q
    |||||||||||||||||||||||||||||||    
T  43633450 tattctttagtaaaaggcgaaagaatagttc 43633480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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