View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_48 (Length: 257)
Name: NF20721_low_48
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 26271940 - 26271728
Alignment:
| Q |
34 |
tgacccctctattaaaaaccaatcatcttagacttttgtaacacttactaccctctatgaaagtcctcacattgccaatatgtgtgctacacacgtgcta |
133 |
Q |
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| T |
26271940 |
tgacccctctattaaaaaccaatcatcttagacttttgtaacacttactaccctctatcaaagtcctcacattgccaatatgtgagctacacacgtgcta |
26271841 |
T |
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| Q |
134 |
atgtctaacaataattttttgacaaatgnnnnnnntatatttataaattgggaaaaacattttcaacatcaagagatttaaatgctagtgttctcaagtt |
233 |
Q |
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||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26271840 |
atgtctaacaataatttcttgacaaatgaaaaaaa-aaatttataaattgggaaaaacattttcaacatcaagagatttaaatgctagtgttctcaagtt |
26271742 |
T |
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| Q |
234 |
ccatttccattcat |
247 |
Q |
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|||||||||||||| |
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| T |
26271741 |
ccatttccattcat |
26271728 |
T |
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