View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_57 (Length: 228)
Name: NF20721_low_57
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 29488283 - 29488124
Alignment:
| Q |
11 |
gttattctttacattcaaattaaataagctcttttcttattattctttatcagactctctaaatcgttttttgttcggactattagattgtcgaccatcg |
110 |
Q |
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| T |
29488283 |
gttattctttacattcaaattaaataagctcttttcttgttattctttatcagactctctaaatcgttttttgtttggactattagattgtcgaccatcg |
29488184 |
T |
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| Q |
111 |
tcatcatt--gagttcttcatcattattcatttctaatatctgaaaaaacatgcaaatat |
168 |
Q |
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| T |
29488183 |
tcatcattgagagttcttcatccttattcatttctaatatctgaaaaaacatgcaaatat |
29488124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 24282351 - 24282388
Alignment:
| Q |
148 |
tctgaaaaaacatgcaaatattaaactcattcaaaata |
185 |
Q |
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| T |
24282351 |
tctgaaaaaacatgcaaatattaaactcattcaaaata |
24282388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 33086753 - 33086715
Alignment:
| Q |
148 |
tctgaaaaaacatgcaaatattaaactcattcaaaataa |
186 |
Q |
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| T |
33086753 |
tctgaaaaaacatacaaatattaaactcattcaaaataa |
33086715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 29487685 - 29487654
Alignment:
| Q |
197 |
atactaagaacattgtatagatagagtattat |
228 |
Q |
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| T |
29487685 |
atactaagaacattgtatagatagagtattat |
29487654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 29486223 - 29486174
Alignment:
| Q |
137 |
catttctaatatctgaaaaaacatgcaaatattaaactcattcaaaataa |
186 |
Q |
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| T |
29486223 |
catttccagtatctgaaaaaccatgcaaataataaactcattaaaaataa |
29486174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 23497013 - 23497051
Alignment:
| Q |
148 |
tctgaaaaaacatgcaaatattaaactcattcaaaataa |
186 |
Q |
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| T |
23497013 |
tctgaaaaaacatgcaaatattaaactcattcaaaataa |
23497051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 13841847 - 13841888
Alignment:
| Q |
148 |
tctgaaaaaacatgcaaatattaaactcattcaaaataaact |
189 |
Q |
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| T |
13841847 |
tctgaaaaaacatgcaaatattagacacattcaaaattaact |
13841888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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