View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_6 (Length: 594)
Name: NF20721_low_6
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 14 - 575
Target Start/End: Original strand, 46397056 - 46397614
Alignment:
| Q |
14 |
aagaaaatgttgtcgttgtactgtgagtgtgaggctttcgtagcctgcaattttgaggggtagagattaattagaattagaatttcttcgaccctttgta |
113 |
Q |
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| T |
46397056 |
aagaaaatgttgtcgtggtactgtgagtgtgaggctttcgtagcctgcaattttgaggggtagagattaattagaattagaatttcttcgaccctttgta |
46397155 |
T |
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| Q |
114 |
tggttactctagaaatgtttggccgccaacaatctggttctcccagagactggatttggtcccaaggagaacttcattgtgtcatcacatttgtttcgtc |
213 |
Q |
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| T |
46397156 |
tggttactctagaaatgtttggccgccaacaatctggttctcccagagactggatttggtcccaaggagaacttcattgtgtca---catttgtttcgtc |
46397252 |
T |
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| Q |
214 |
actgacatttagaatcattcatctttaaactctcctgacatttgttatgcttgcagtttgcgttgcccgtagaatactataatagtttcaccggcttctg |
313 |
Q |
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| T |
46397253 |
actgacatttagaatcattcatctttaaactctcccgacatttgttatgcttgcagtttgcgttgcccgtagaatactataatagtttcaccggcttctg |
46397352 |
T |
|
| Q |
314 |
ttttgttgttcctgttatttagttgattggcctactttctggacttctatatgttcattttacattacatttcaaaatttgatgctatccagattctaca |
413 |
Q |
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| T |
46397353 |
ttttgttgttcctgttatttagttgattggcctactttctggacttctatatgttcattttacattacatttcaaaatttgatgctatccagattctaca |
46397452 |
T |
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| Q |
414 |
ttctactggtgtcataccaccgaagtactcttactctcaaacataagcaaaataaataaatacatagatatatttttgtttatatgtaagaacggatgga |
513 |
Q |
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| T |
46397453 |
ttccactggtgtcataccaccgaagtactcttactctcaaacataagcaaaataaataaatacatagatatatttttgtttatatgtaagaacggatgga |
46397552 |
T |
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| Q |
514 |
tggaatgtttgataagcatcatacgtggtaaatgcatgccactgattcattgtcaatgtgcc |
575 |
Q |
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| T |
46397553 |
tggaatgtttgataagcatcatacgtggtaaatgcatgccactgattcattgtcaatgtgcc |
46397614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 7216942 - 7217271
Alignment:
| Q |
14 |
aagaaaatgttgtcgttgtactgtgagtgtgaggctttcgtagcctgcaattttgaggggtagag-attaattagaattagaatttcttcgaccctttgt |
112 |
Q |
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||||||| |||| || |||||||||||||||||||||| ||||||||||||||| || |||||| ||||| |||||||||| ||||||||||||| | | |
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| T |
7216942 |
aagaaaaggttgctgtggtactgtgagtgtgaggctttcttagcctgcaattttgtggagtagaggattaagtagaattagagtttcttcgaccctattt |
7217041 |
T |
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| Q |
113 |
atggttactctagaaatgtttggccgccaacaatctggttctcccagagactggatttggtcccaaggagaacttcattgtgtcatcacatttgtttcgt |
212 |
Q |
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| T |
7217042 |
atggccactctagaaatgtttggccgccaacaatctggttctcccaacgactggatttggtcccaaggagaacctcattgtg---tcacatttgttttgt |
7217138 |
T |
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| Q |
213 |
cactgacatttagaatcattcatctttaaactctcctgacattt---------gttatgcttgcagtttgcgttgcccgtagaatactataatagtttca |
303 |
Q |
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| T |
7217139 |
tactgacatttagaatcattcatcttt-gactctcttgacatttgacaagcaggttttgcttgcggtttgcgctacgcctagagtattgtattagtttca |
7217237 |
T |
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| Q |
304 |
ccggcttctgttttgttgttcctgttatttagtt |
337 |
Q |
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| T |
7217238 |
ccggcttctgttttgttgttcttgttattgagtt |
7217271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 7217359 - 7217416
Alignment:
| Q |
341 |
tggcctactttctggacttctatatgttcattttacattacatttcaaaatttgatgc |
398 |
Q |
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| T |
7217359 |
tggcttactttctggacttctatatgttcattttactttgaatttcaaaatctgatgc |
7217416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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