View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_7 (Length: 577)
Name: NF20721_low_7
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Complemental strand, 39642329 - 39641782
Alignment:
| Q |
11 |
cacagatcctatattctagttcagttcacgatggcttctttcacctgctccgcctccgacctcaacgctctcctcggcagcggtgcaaattccacagccg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
39642329 |
cacagatcctatattctagttcagttcacgatggcttctttcacctgctccgcctccgacctcaacactctcctcggcagtggtgcaaattccacagccg |
39642230 |
T |
|
| Q |
111 |
ctgccgaatacatctgcaacggctttaatgccgttgcaaacaaattcattgacacaacctatgccgttgacaacacctaccttctcttctcttcttacct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642229 |
ctgccgaatacatctgcaacggctttaatgccgttgcaaacaaattcattgacacaacctatgccgttgacaacacctaccttctcttctcttcttacct |
39642130 |
T |
|
| Q |
211 |
tgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgttaaccaatgttcttgatgcagcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642129 |
tgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgttaaccaatgttcttgatgcagcc |
39642030 |
T |
|
| Q |
311 |
acaggcggcctctttttctatattttcgggtttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtcttagtgattttc |
410 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642029 |
acaggcggcatctttttctatattttcgggtttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtcttagtgattttc |
39641930 |
T |
|
| Q |
411 |
cttctcagtcttttgattatggatattttctatatcaatgggcttttgcaattgctgcagcaggaatcactagtggttcaattgctgagagaacacaatt |
510 |
Q |
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| T |
39641929 |
cttctcagtcttttgattatggatattttctatatcaatgggcttttgcaattgcttcagcaggaatcactagtggttcaattgctgagagaacacaatt |
39641830 |
T |
|
| Q |
511 |
tgtttcttatttgatttattcttcttttctaacaggtttagtttatcc |
558 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39641829 |
tgtttcttatttgatttattcgtcttttctaacaggtttagtttatcc |
39641782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 41 - 558
Target Start/End: Complemental strand, 46670496 - 46669979
Alignment:
| Q |
41 |
atggcttctttcacctgctccgcctccgacctcaacgctctcctcggcagcggtgcaaattccacagccgctgccgaatacatctgcaacggctttaatg |
140 |
Q |
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|||||| |||||||||| ||||||||||||||| |||||||||||||| | | ||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
46670496 |
atggctactttcacctgttccgcctccgacctccacgctctcctcggcggaagcgcaaactccacagccgctgccgaatacatctgtggcggcttcaatg |
46670397 |
T |
|
| Q |
141 |
ccgttgcaaacaaattcattgacacaacctatgccgttgacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccat |
240 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||| || |
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| T |
46670396 |
ccgtcgcaaacaaattcatcgacacttcctatgctgtcgacaacacttaccttctattctcagcttaccttgtttttgccatgcaactaggttttgctat |
46670297 |
T |
|
| Q |
241 |
gctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgttaaccaatgttcttgatgcagccacaggcggcctctttttctatattttcggg |
340 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| || | ||| || | ||||||||| |||| || |
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| T |
46670296 |
gctttgtgccggttctgttcgtgccaaaaacactatgaacattatgttaaccaatgttcttgatgccgcaataggtggtatttttttctatgtttttggt |
46670197 |
T |
|
| Q |
341 |
tttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtcttagtgattttccttctcagtcttttgattatggatattttc |
440 |
Q |
| |
|
|||||| | ||||| || |||||||| || |||||||| |||||||||||||| ||||||| |||||| ||||| || ||||||||||| || | ||| | |
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| T |
46670196 |
tttgccctagcttttggaacaccttcaaacggtttcataggaaaacatttttttggtcttactgatttcccttcacaatcttttgattacggttttttcc |
46670097 |
T |
|
| Q |
441 |
tatatcaatgggcttttgcaattgctgcagcaggaatcactagtggttcaattgctgagagaacacaatttgtttcttatttgatttattcttcttttct |
540 |
Q |
| |
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| | ||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| || ||| | |
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| T |
46670096 |
tctttcaatgggcttttgccattgctgcagcagggatcacaagtggatcaattgctgagagaacacagttcgtttcttatttgatttattcgtcgttttt |
46669997 |
T |
|
| Q |
541 |
aacaggtttagtttatcc |
558 |
Q |
| |
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||| |||||||||||||| |
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| T |
46669996 |
aaccggtttagtttatcc |
46669979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 176 - 399
Target Start/End: Complemental strand, 17091441 - 17091218
Alignment:
| Q |
176 |
gttgacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacacca |
275 |
Q |
| |
|
|||||||||||||| ||| | ||||| |||||||||| || | |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||| |
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| T |
17091441 |
gttgacaacacctatcttttattctcagcttaccttgtcttctctatgcaacttggttttgccatgctctgtgctggttcagttcgtgctaagaacacca |
17091342 |
T |
|
| Q |
276 |
tgaatattatgttaaccaatgttcttgatgcagccacaggcggcctctttttctatattttcgggtttgcctttgctttcggcacaccttctaatggttt |
375 |
Q |
| |
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|||| || ||| | || |||||||| || || || | ||||| | || | |||| | ||||| ||||||||||| ||||| |||||||| |||||||| |
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| T |
17091341 |
tgaacatcatgctcacaaatgttctcgacgccgctgctggcggtgttttctactatctcttcggttttgcctttgccttcggaacaccttcaaatggttt |
17091242 |
T |
|
| Q |
376 |
cattggaaaacattttttcggtct |
399 |
Q |
| |
|
||| ||||||||||| |||||||| |
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| T |
17091241 |
cataggaaaacatttcttcggtct |
17091218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 35416432 - 35416308
Alignment:
| Q |
179 |
gacaacacctaccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatga |
278 |
Q |
| |
|
||||||||||||||||||||||| |||| | || ||||||||||| || ||||| || ||||| || || || |||||||| ||||||||||| |||| |
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| T |
35416432 |
gacaacacctaccttctcttctcagcttatttagtctttgccatgcagcttggtttcgctatgctctgcgctggctccgttcgagccaaaaacactatga |
35416333 |
T |
|
| Q |
279 |
atattatgttaaccaatgttcttga |
303 |
Q |
| |
|
| || ||| | |||||||| ||||| |
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| T |
35416332 |
acatcatgctcaccaatgtccttga |
35416308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 308
Target Start/End: Complemental strand, 25545202 - 25545082
Alignment:
| Q |
188 |
taccttctcttctcttcttaccttgtttttgccatgcaactcggttttgccatgctttgtgcaggttccgttcgtgccaaaaacaccatgaatattatgt |
287 |
Q |
| |
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||||||||||||||| | ||| | || |||| |||||||| || ||||||||| | |||||||| || || ||||||||||| ||||||| || ||| |
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| T |
25545202 |
taccttctcttctctacctacttagtctttgtaatgcaactaggctttgccatgatatgtgcaggatctgtccgtgccaaaaatgccatgaacataatgc |
25545103 |
T |
|
| Q |
288 |
taaccaatgttcttgatgcag |
308 |
Q |
| |
|
| |||||||| ||||||||| |
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|
| T |
25545102 |
tcaccaatgtagttgatgcag |
25545082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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