View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_8 (Length: 557)
Name: NF20721_low_8
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 47657018 - 47656686
Alignment:
| Q |
6 |
actgaaatgaatataagtttaaaattaaatttcaaccgaannnnnnnnaatattatatacaagtaaaagacattcttttttattattaaaaaatgagtgg |
105 |
Q |
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| T |
47657018 |
actgaaatgaatataagtttaaaattaaatttcaaccgaattttttttaatattatgtacaagtaaaagacattcttttttattattaaaaaatgagtgg |
47656919 |
T |
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| Q |
106 |
nnnnnnntatggagagaatccactcttgagaaagaatggctctgagttatagaaaaaatataataataaaaaggtaggcgactcatttctatttctaaag |
205 |
Q |
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| T |
47656918 |
aaaaaaatatggagagaacccactcttgagaaagaatggctctgagttatagaaaaaatataataataaaaaggtaggcgactcatttctatttctaaag |
47656819 |
T |
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| Q |
206 |
agaagaaaacattagggcaaaatactgaagcatacttatttaagattctaannnnnnnnataccatttaagattttaagttggttcacaatgtttttgta |
305 |
Q |
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| T |
47656818 |
agaagaaaacattagggcaaaatactgaagcatacttatttaagattctaattttttttataccatttaagattctaagttggttcacaatgtttttgta |
47656719 |
T |
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| Q |
306 |
attattcagggtagatccaagaataagattctc |
338 |
Q |
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| T |
47656718 |
attattcagggtagatccaagaataagattctc |
47656686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 492 - 540
Target Start/End: Complemental strand, 47656038 - 47655990
Alignment:
| Q |
492 |
ccatttggctccccctccatccatgccattgatcacatcatataccatg |
540 |
Q |
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| T |
47656038 |
ccatttggctccccctccatccatgccattgatcacatcatataccatg |
47655990 |
T |
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