View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_9 (Length: 526)
Name: NF20721_low_9
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_9 |
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| [»] scaffold0076 (2 HSPs) |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 422 - 509
Target Start/End: Original strand, 21279797 - 21279884
Alignment:
| Q |
422 |
agccattggaaaaagaatccaatgttgcaaatgaaatataaattctaatgtaaagaaagatgagaatgatgaagatgctttttaagat |
509 |
Q |
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| T |
21279797 |
agccattggaaaaagaatccaatgttgcaaatgaaacataaattctaatgtaaagaaagatgagaatgatgaagatgctttttaagat |
21279884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 14588 - 14754
Alignment:
| Q |
105 |
tgttaattaaaaatatgcaagtgtgtatgtttgttttctcttttagagggactaacgttgaattg-gaagtgtagaatttattttaacatgcttgcttg- |
202 |
Q |
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| T |
14588 |
tgttaaataaaaatatgcaaatgtgaatgtttggtttcaattttagaggggctaacgttgaatttaggggtataaaattgattttaacttgtttgttttt |
14687 |
T |
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| Q |
203 |
aagtagaattggattagtaaatttgattatataactcaattctctacgtaactttgactcgtttgat |
269 |
Q |
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| T |
14688 |
aagtaaaattggattagtaaatttgattatataacttaattctctgcccaactttgactcatttgat |
14754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 14854 - 14918
Alignment:
| Q |
312 |
gaataattgttcaattttggatttagaactagatgtctgtgaagaaattgaacaccattgttctg |
376 |
Q |
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| T |
14854 |
gaataactgttccattttggattaagaactagatgtctgtgaggaaattgaaaaccattcttctg |
14918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 14191 - 14137
Alignment:
| Q |
312 |
gaataattgttcaattttggatttagaactagatgtctgtgaagaaattgaacac |
366 |
Q |
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| T |
14191 |
gaataattgttcaattttggatttagaactagataactgtgaggaaattgaacac |
14137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 23527 - 23474
Alignment:
| Q |
312 |
gaataattgttcaattttggatttagaactagatgtctgtgaagaaattgaaca |
365 |
Q |
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| T |
23527 |
gaataatttttcaattttggatttagaacaagatgtatgagagaaaattgaaca |
23474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 21634075 - 21634021
Alignment:
| Q |
312 |
gaataattgttcaattttggatttagaactagatgtctgtgaagaaattgaacac |
366 |
Q |
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| T |
21634075 |
gaataattgttcaattttggatttagaactagataactatgaggaaattgaacac |
21634021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 21642322 - 21642268
Alignment:
| Q |
312 |
gaataattgttcaattttggatttagaactagatgtctgtgaagaaattgaacac |
366 |
Q |
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| T |
21642322 |
gaataattgttcaattttggatttagaactagataactatgaggaaattgaacac |
21642268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 21638509 - 21638453
Alignment:
| Q |
259 |
actcgtttgatttataatcaaagtttaacgaattatttatcaaattaagtttcgaat |
315 |
Q |
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| T |
21638509 |
actcatttaatttataaaccaagtttaatgaatcatttatcaaatcaagtttcgaat |
21638453 |
T |
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