View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20722_high_1 (Length: 818)
Name: NF20722_high_1
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 669; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 1 - 797
Target Start/End: Complemental strand, 2928756 - 2927962
Alignment:
| Q |
1 |
caggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaaattat---------------gaccgcacttgcagttgtggaccgtaatttaactcta |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
2928756 |
caggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaaattataatattttatattatgaccgcacttgcagttgtggaccgtaatttaattcta |
2928657 |
T |
|
| Q |
86 |
ggatttaatatgtataggtctcggaggccacttgctaatttcagctaatgaatgataatagagacttattggtttatgttggttttcgtgttaattaggt |
185 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2928656 |
gg------------taggtctcggaggccacttgctaatttcagctaatgaatgataatagagacttattggtttatgttggttttcgtgttaattaggt |
2928569 |
T |
|
| Q |
186 |
tgcgcgtgttgttgctcgacactttgctgaacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttgtcaccattgattat |
285 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2928568 |
tgcgcgtgttgttgctcgacactttgttgaacaggtaacaaagaacttgtggttttatgctatacataggatgctt-----atttgtcaccattgattat |
2928474 |
T |
|
| Q |
286 |
gaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttcttttctgaaccattcattttcatttcattg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2928473 |
gaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttcttttctaaaccattcattttcatttcattg |
2928374 |
T |
|
| Q |
386 |
acagagcttttaaggaagatacttcagaaactaaataaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatagatagg |
485 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2928373 |
atagagcttttaaggaagatacttcagaaactaaataaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatagatagg |
2928274 |
T |
|
| Q |
486 |
ttcatgatcagtagccttaagttttctattgatgcatctatatcacctttgtaacattctattacgactatctaacaatgatctggtatggcttttttct |
585 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2928273 |
ttcatgatcagtggccttaagttttctattgatgcatctatatcacctttgtaacattctattacgactatctaacagtgatctggtatggcttttttct |
2928174 |
T |
|
| Q |
586 |
gtgctgcatctgctgtgttctaatggtcctttctgtcattcaatgttgtcttctttgttaaatatatgcttatgtttgttctcaacccaatttattcaca |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2928173 |
gtgctgcatctgctgtgttctaatggtcctttctgtcattcaatgttgtcttctttgttacatatatgcttatgtttgttctcaacccaatttattcaca |
2928074 |
T |
|
| Q |
686 |
atttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtctacgaggagctgg |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
2928073 |
atttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggtggctcctaaagtctacgaggagctgg |
2927974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 422 - 796
Target Start/End: Original strand, 2310927 - 2311307
Alignment:
| Q |
422 |
aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatag------ataggttcatga-tcagtagccttaagttttctat |
514 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| | ||| | ||| |||||| | |
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|
| T |
2310927 |
aaatattttaagaatttatgagcaatggctctgtttatgttaattattcttccttatagtcatagataggttcatcaatcatgata--taacttttctgt |
2311024 |
T |
|
| Q |
515 |
tgatgcatctatatcacctttgtaacattctattac-------gactatctaacaatgatctggtatggcttttttctgtgctgcatctgctgtgttcta |
607 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| | |||||||||||||||||| ||| |||||||||||| ||||||||||| || |||| |
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|
| T |
2311025 |
tgatgcatctat--caactttgtaacattctattaatggctctggctatctaacaatgatctgatatagcttttttctgtcctgcatctgctatgatcta |
2311122 |
T |
|
| Q |
608 |
atggtcctttctgtcattcaatgttgtcttctttgttaaatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaag |
707 |
Q |
| |
|
||||||| ||||||||||||||||||||| || | ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
2311123 |
atggtcccttctgtcattcaatgttgtctcatt----acatatatgcttatgcttgttctcaacccactttattcacaatttgcatgtttgaatttgaag |
2311218 |
T |
|
| Q |
708 |
ctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtctacgaggagctgggaaagttaagc |
796 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
2311219 |
ctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcacctaaagtctacgaggagctgggaaagttaagc |
2311307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 115 - 391
Target Start/End: Original strand, 2310431 - 2310703
Alignment:
| Q |
115 |
acttgctaatttcagctaatgaatgataatagagacttattggtttatgttggttttcgtgttaattaggttgcgcgtgttgttgctcgacactttgctg |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2310431 |
acttgctaatttcagctaatg----ataatagagactaatcagtttatgttggttttcgtgttaattaggttgcgcatgttgttgctcgacactttgctg |
2310526 |
T |
|
| Q |
215 |
aacaggtaacaaagaacttgtggttttatgctatacataggatgcttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatag |
314 |
Q |
| |
|
|| || ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| || || | |
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|
| T |
2310527 |
aaaagataacaaagagcttctggttttatgctatacataggatgcttgagatatttgtcaccattgattttgaaaaaagattgtcaccacttatcgatcg |
2310626 |
T |
|
| Q |
315 |
actacctttcaaccggcggtatgattaattcattatctttcttttctgaaccattcattttcatttcattgacagag |
391 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
2310627 |
actacctttcaatcgtcggtatgactaattcattatctttcttttctaaaccattcattttcatttcattgatagag |
2310703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 681 - 753
Target Start/End: Complemental strand, 10173789 - 10173717
Alignment:
| Q |
681 |
tcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
753 |
Q |
| |
|
||||||||| || || |||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
10173789 |
tcacaatttacaagtgtgaatttgaagcggattacattgggcttctactaatggcagccgctggctatgatcc |
10173717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2310281 - 2310397
Alignment:
| Q |
1 |
caggtaaatgtagtcaattgcggttgtgatgtttttgtaaaaa----------attatgaccgcacttgcagttgtggaccgtaatttaactctaggatt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||| || ||||||||||||| ||||||| |||| |||| |
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|
| T |
2310281 |
caggtaaatgtagtcaattgcggttgtgacgtttttgtagaaaattttaatatattgtgactgcatttccagttgtggaccgcaatttaattctatgatt |
2310380 |
T |
|
| Q |
91 |
taatatgtataggtctc |
107 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
2310381 |
taatatggataggtctc |
2310397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 661 - 753
Target Start/End: Complemental strand, 1238024 - 1237932
Alignment:
| Q |
661 |
ttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
753 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||| |
|
|
| T |
1238024 |
ttgttctcaatccaatttattcacaatttgcaggtttgaatttgaagcggattacattgggcttctactaatggcagcagttggctatgatcc |
1237932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 643 - 757
Target Start/End: Complemental strand, 29088974 - 29088860
Alignment:
| Q |
643 |
ttaaatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagct |
742 |
Q |
| |
|
|||||||||| || ||| || ||||||| ||||| |||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||| ||||| |
|
|
| T |
29088974 |
ttaaatatatactcatgcttattctcaatccaatgtattcacaatttgcagttttgaatttgaagttgattacattgggcttctactaatggcatcagct |
29088875 |
T |
|
| Q |
743 |
ggctatgatcctcgg |
757 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29088874 |
ggctatgatcctcgg |
29088860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 661 - 753
Target Start/End: Original strand, 1175417 - 1175509
Alignment:
| Q |
661 |
ttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
753 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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|
| T |
1175417 |
ttgttctcaacaaaatttattcacaatttgcaggtttgaatatgaagctgattacattgggcttctactgatggcagcagctggctatgatcc |
1175509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 657 - 740
Target Start/End: Complemental strand, 794442 - 794359
Alignment:
| Q |
657 |
atgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcag |
740 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| ||||||||||||||| ||||| || |||||| ||||||| ||||||| |
|
|
| T |
794442 |
atgtttgttctcaatccaatatattcataatttgaaggtttgaatttgaatacgattacattgggcttatactaatcgcagcag |
794359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 774
Target Start/End: Complemental strand, 43286845 - 43286724
Alignment:
| Q |
662 |
tgttctcaacccaatttatt-cacaatttgcaggtttgaatttgaagctgatta--------tatcgggcttctactaatggcagcagctggctatgatc |
752 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| |||||||||||||| || | ||||||||||||| |
|
|
| T |
43286845 |
tgttctcaacccaatttatttcataatttgtaggattgaatttgaagctgattacattgggcaatctggcttctactaatgacatcggctggctatgatc |
43286746 |
T |
|
| Q |
753 |
ctcgggttgctcctaaagtcta |
774 |
Q |
| |
|
| || |||| ||||||||||| |
|
|
| T |
43286745 |
cccgacttgcacctaaagtcta |
43286724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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