View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20722_high_13 (Length: 397)
Name: NF20722_high_13
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32589902 - 32589537
Alignment:
| Q |
1 |
tgcagataaacttggagttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32589902 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagttt |
32589803 |
T |
|
| Q |
101 |
tatttctcacaacttataatgatactaaatttgtttaactttcaactcaaaacatggatttgcagcagcctacgataaatgcaaactaatgtaaccttat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32589802 |
gatttctcacaatttataatgatactaaatttgtttaactttcaactcaaaacatggatctgcagcagcctacgataaatgcaaactaatgtaaccttat |
32589703 |
T |
|
| Q |
201 |
aatgaaatcgtttgtgtattatatatacatacatatgcatgtgaaaattgtctcagttcttgcatacaacttcttgctaaaaattctatggagataggta |
300 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32589702 |
aatgaaatcatttgtgtatta--tatacatacatatgcat---------------gttcttgcatacaacttcttgctaaaaattctatggagataggta |
32589620 |
T |
|
| Q |
301 |
tgggcaggtcctctcactaataacaaagtagcagtaattttatggaatagaagttcatcaaatgcaacagtaactgcatcttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32589619 |
tgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatcttg |
32589537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32600350 - 32599985
Alignment:
| Q |
1 |
tgcagataaacttggagttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600350 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagttt |
32600251 |
T |
|
| Q |
101 |
tatttctcacaacttataatgatactaaatttgtttaactttcaactcaaaacatggatttgcagcagcctacgataaatgcaaactaatgtaaccttat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600250 |
gatttctcacaatttataatgatactaaatttgtttaactttcaactcaaaacatggatctgcagcagcctacgataaatgcaaactaatgtaaccttat |
32600151 |
T |
|
| Q |
201 |
aatgaaatcgtttgtgtattatatatacatacatatgcatgtgaaaattgtctcagttcttgcatacaacttcttgctaaaaattctatggagataggta |
300 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600150 |
aatgaaatcatttgtgtatta--tatacatacatatgcat---------------gttcttgcatacaacttcttgctaaaaattctatggagataggta |
32600068 |
T |
|
| Q |
301 |
tgggcaggtcctctcactaataacaaagtagcagtaattttatggaatagaagttcatcaaatgcaacagtaactgcatcttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600067 |
tgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaagttcatcaaatgcaacagtaactgcatcttg |
32599985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 24884315 - 24884402
Alignment:
| Q |
296 |
aggtatgggcaggtcctctcactaataacaaagtagcagtaattttatggaatagaagttcatcaaatgcaacagtaactgcatcttg |
383 |
Q |
| |
|
|||| |||||||||||||||| | |||||| |||| || | |||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
24884315 |
aggtttgggcaggtcctctcagtgataacaggctagcggtcgtcttatggaatagaagttcatcgaaagcaatagtaactgcatcttg |
24884402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 34577665 - 34577579
Alignment:
| Q |
1 |
tgcagataaacttggagttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattttctttccctttatattttat |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgatattattttcttttcctttatattttat |
34577579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 34577373 - 34577286
Alignment:
| Q |
296 |
aggtatgggcaggtcctctcactaataacaaagtagcagtaattttatggaatagaagttcatcaaatgcaacagtaactgcatcttg |
383 |
Q |
| |
|
|||||||||||||||| || | ||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
34577373 |
aggtatgggcaggtccccttagtaaaaacaaagtagcagtggtcttatggaatagaagttcatcaaatgcaacagttactgcgtcttg |
34577286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 34592870 - 34592785
Alignment:
| Q |
295 |
taggtatgggcaggtcctctcactaataacaaagtagcagtaattttatggaatagaagttcatcaaatgcaacagtaactgcatc |
380 |
Q |
| |
|
||||| |||||||||||||| | | | ||||| ||||||| |||||||||||||| || |||||||||||||| |||| |||||| |
|
|
| T |
34592870 |
taggtttgggcaggtcctctaagtgaaaacaagctagcagttattttatggaataggagctcatcaaatgcaacggtaattgcatc |
34592785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University