View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_high_14 (Length: 386)
Name: NF20722_high_14
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 158 - 371
Target Start/End: Complemental strand, 969309 - 969096
Alignment:
| Q |
158 |
ttatccaacatgttcaaatcctaaatttcttttgtcactgaaacaatttcagttgtaataaccaacataaccctattcattcaaactattaccacccttt |
257 |
Q |
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| T |
969309 |
ttatccaacatgttcaaatcctaaatttcttttgtcactaaaacaatttcagttgtaataaccaacataaccctattcattcaaactattaccacccttt |
969210 |
T |
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| Q |
258 |
gtaattggtttaaagcctatataatagaaaattctgctttcaatatatattcaattggtctataaagaggataaaaatcacaaacaaccttatatcaagc |
357 |
Q |
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| T |
969209 |
ttaattggtttaatgtctatataatagaaaattctgctttcaatatatattcaattggtctataaagaggataaaaatcacaaacacccttatatcaaga |
969110 |
T |
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| Q |
358 |
aaataaatgaaaat |
371 |
Q |
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|||||||||||||| |
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| T |
969109 |
aaataaatgaaaat |
969096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 970093 - 970010
Alignment:
| Q |
9 |
atcaaggaaattagtagtttgttcaaattatggtatgcttatttattcaaattacgctagtctacaacgttatagcgcggctat |
92 |
Q |
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| T |
970093 |
atcaaggaaattagtagtttgttcaaattatggtatgcttatttattcaaattacgctagtctacaacgctatagcgcggctat |
970010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 31186119 - 31186087
Alignment:
| Q |
196 |
tgaaacaatttcagttgtaataaccaacataac |
228 |
Q |
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| T |
31186119 |
tgaaacaatttcagttgtaataaccaacataac |
31186087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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