View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_high_18 (Length: 357)
Name: NF20722_high_18
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 84 - 341
Target Start/End: Original strand, 24228718 - 24228975
Alignment:
| Q |
84 |
caaacaacatagctagtcttaatagattgtttgcaattgacaactttgataaattataaatataataatcatctgtccaagtccaacctaaactgtacca |
183 |
Q |
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| T |
24228718 |
caaacaacatagctagtcttaatagattgtttgcaattgacaactttgataaattataaatataat---catctgtccaagtccaacctaaactgtacca |
24228814 |
T |
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| Q |
184 |
tgattcctagttaatatagtttagccgtccaaagcattgaatttgaagctgacttggtagttatagtttgaagtcaatgtaca----tacatgcaaatgg |
279 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
24228815 |
tgattcctagtta-tatagtttagccgtccaaagcattgaatttgaagctgacttggtagttatagtttggagtcaatgtacatacatacatgcaaatgg |
24228913 |
T |
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| Q |
280 |
aaacaaagaatagtacatatggtttgaagctagctggtagatgaacacaactcagttgtacc |
341 |
Q |
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| T |
24228914 |
aaacaaagaatagtacatatggtttgaagctagctggtagattaacacaactcagttgtacc |
24228975 |
T |
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