View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_high_19 (Length: 352)
Name: NF20722_high_19
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 6988268 - 6988605
Alignment:
| Q |
15 |
agtatggaaatttgtatttnnnnnnnnngggcaacccggtgcaccgaaatttgtatttaagtatcnnnnnnnnaatcagcttgaaagagagagagtgcga |
114 |
Q |
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| T |
6988268 |
agtatggaaatttgtatttaaaaaaaaagggcaacccggtgcaccgaaatttgtatttaagtatcttttttttaatcagcttgaaagagagatagtgcga |
6988367 |
T |
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| Q |
115 |
tcaaatcatcaagaagcgctaagaaaattacacctaaaggtagaaacctgtagtcttttactataatctctacttttcgttttactagtgtggtccactt |
214 |
Q |
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| T |
6988368 |
tcaaatcatcaagaagcgctaagaaaattacacctaaaggtagaaacctgtagtcttttactataatctctacttttcgttttactagtgtggtccactt |
6988467 |
T |
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| Q |
215 |
acattatattcaattcaatttgtacacaaaatcactattgtttaaaaataaaccattgtagtttcacgagccatggggccagctgatgaagactggttat |
314 |
Q |
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| T |
6988468 |
acattatattcaattcaatttgtacacaaaatcactattgtttaaaaataaaccattgtagtttcacgagccatggggccagctgatgaagactggttat |
6988567 |
T |
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| Q |
315 |
cagaactctcgctttgctcatcaggtaaagttaaacac |
352 |
Q |
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| T |
6988568 |
cagaactctcgctttgctcatcaggtaaagttaaacac |
6988605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 35481690 - 35481606
Alignment:
| Q |
259 |
aaaataaaccattgtagtttcacgagccatggggccagctgatgaagactggttatcagaactctcgctttgctcatcaggtaaa |
343 |
Q |
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| T |
35481690 |
aaaataaaccattgcagtttcacgagacatggggacaactgatgaagaccggttatcagaactcgcgctttgctcatcaggtaaa |
35481606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 52360019 - 52360088
Alignment:
| Q |
274 |
agtttcacgagccatggggccagctgatgaagactggttatcagaactctcgctttgctcatcaggtaaa |
343 |
Q |
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| T |
52360019 |
agtttcacgaaccatggggacagcttatgaaaaccggttatcagaattctcgctttgctcatcaggtaaa |
52360088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 52359827 - 52359896
Alignment:
| Q |
91 |
cagcttgaaagagagagagtgcgatcaaatcatcaagaagcgctaagaaaattacacctaaaggtagaaa |
160 |
Q |
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| T |
52359827 |
cagcttgaaagagagaaaatgcgattaatccatcaagaagctcaaagaaaattacatcaaagggtagaaa |
52359896 |
T |
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