View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20722_high_20 (Length: 348)

Name: NF20722_high_20
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20722_high_20
NF20722_high_20
[»] chr2 (5 HSPs)
chr2 (1-283)||(2343654-2343937)
chr2 (1-86)||(2336243-2336328)
chr2 (63-150)||(2323267-2323354)
chr2 (1-66)||(2313090-2313155)
chr2 (89-150)||(2313554-2313615)
[»] chr4 (1 HSPs)
chr4 (13-82)||(36800204-36800273)
[»] chr5 (1 HSPs)
chr5 (14-83)||(12969834-12969903)
[»] scaffold1031 (1 HSPs)
scaffold1031 (17-82)||(2385-2450)
[»] chr8 (5 HSPs)
chr8 (17-82)||(217014-217079)
chr8 (17-82)||(693574-693639)
chr8 (17-82)||(697783-697848)
chr8 (17-82)||(730637-730702)
chr8 (17-82)||(854532-854597)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2343654 - 2343937
Alignment:
Q  1 taggttacttggtatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagtaatggaacatgcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2343654 taggttacttggtatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagtaatggaacatgcact 2343753  T
Q  101 gaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatatgtaatactttggtggaggatcacttctctcaaattttgtcaattaattct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2343754 gaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatatgtaatactttggtggaggatcacttctctcaaattttgtcatttaattct 2343853  T
Q  201 ccatacattattgttatgagtttttagtgg-ttttcttttccatgtttattgctagagattctcaaagagtagagtagagagca 283  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2343854 ccatacattattgttatgagtttttagtggttttttttttccatgtttattgctagagattctcaaagagtagagtagagagca 2343937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2336243 - 2336328
Alignment:
Q  1 taggttacttggtatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaagta 86  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  2336243 taggttacttgctatattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaagta 2336328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 2323267 - 2323354
Alignment:
Q  63 ctagcaatggtgttaatggaagtaatggaacatgcactgaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatat 150  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  2323267 ctagcaatggtgttaatggaagtaagggaacgtgcactgaaggtgctgctgctacttgcacttctactacgggaatacagtaagatat 2323354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2313090 - 2313155
Alignment:
Q  1 taggttacttggtatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctag 66  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  2313090 taggttacttgctatattttgtgtgattaatttgttaaactatttggatctaggagcaatagctag 2313155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 2313554 - 2313615
Alignment:
Q  89 ggaacatgcactgaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatat 150  Q
    |||||||||||||||  ||||||||||||||| |||||| ||||||||||||||||||||||    
T  2313554 ggaacatgcactgaatatgctgctgctacttggacttctactacaggaatacagtaagatat 2313615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 36800273 - 36800204
Alignment:
Q  13 tatattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||||||  |||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  36800273 tatattttgtgtgattaacatgttgaactatttggaccgaggagcaatagctagcaatggtgttaatgga 36800204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 12969903 - 12969834
Alignment:
Q  14 atattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaa 83  Q
    ||||||||| | || |||||| | || ||| ||||||||||||| |||||||||||||||||||||||||    
T  12969903 atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa 12969834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 2450 - 2385
Alignment:
Q  17 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  2450 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 2385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 217014 - 217079
Alignment:
Q  17 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  217014 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 217079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 693574 - 693639
Alignment:
Q  17 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  693574 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 693639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 697783 - 697848
Alignment:
Q  17 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  697783 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 697848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 730637 - 730702
Alignment:
Q  17 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  730637 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 730702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 854532 - 854597
Alignment:
Q  17 ttttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatgga 82  Q
    ||||||||||||||  |||| |||||| || | |||||||||||| ||||||||  ||||||||||    
T  854532 ttttgtgtgattaacatgttgaactatttgtaccgaggagcaataactagcaataatgttaatgga 854597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University