View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20722_high_23 (Length: 322)
Name: NF20722_high_23
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 26271751 - 26271440
Alignment:
| Q |
1 |
ttctcaagttccatttccattcatatcaaaaatatattttcccttttgagcaaaaagagtaattacaaacttacaagtgagaatcaattatttatttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
26271751 |
ttctcaagttccatttccattcatatcaaaaatatattttcccttttgagcaaaaagagtaattacaaatttacaagtgagaatcaattatttatttgat |
26271652 |
T |
|
| Q |
101 |
tctcatgcacctaacaagaacctctacaaatttactatacatatgctcctttaaatacatcctttgcaccttctttcttccatacattcccatttgttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26271651 |
tctcatgcacctaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcaccttctttcttccatacattcccatttgttct |
26271552 |
T |
|
| Q |
201 |
cttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtctaataggatgaagaagaccactcacattatgctcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26271551 |
cttgccaatcggttttcaagtaaaaactcaagattttgagcaaggacatgattccctttacgtctaataggatgaagaagaccactcacattatgctcca |
26271452 |
T |
|
| Q |
301 |
caatttcctttg |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26271451 |
caatttcctttg |
26271440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 3110104 - 3110345
Alignment:
| Q |
71 |
ttacaagtgagaatcaattatttatttgcttctcatgcacctaacaagaacctctacaaatttactatacatatgctcctttaaatacatcctttgcacc |
170 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
3110104 |
ttacaagtgagaagcaattatttatttacttcacaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
3110203 |
T |
|
| Q |
171 |
ttctttcttccatacattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtctaatag |
270 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3110204 |
ttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtctaatag |
3110303 |
T |
|
| Q |
271 |
gatgaagaagaccactcacattatgctccacaatttcctttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3110304 |
gatgaagaagaccactcacattatgctccacaatttcctttg |
3110345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 44065139 - 44064981
Alignment:
| Q |
91 |
tttatttgcttctcatgcacctaacaagaacctctacaaatttactatacatatgctcctttaaatacatcctttgcaccttctttcttccatacattcc |
190 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||| ||||||| || | ||| ||||||||||| | |||||| || || || | || || |
|
|
| T |
44065139 |
tttatttgcttctcatgcacctaacaataacctcaacaaatttcttatacatgtgttgcttcaaatacatcctctccacctttttcctgccttctatccc |
44065040 |
T |
|
| Q |
191 |
catttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacat |
249 |
Q |
| |
|
|||||| | |||||||| |||||| ||||||| || |||||| || ||||| |||| |
|
|
| T |
44065039 |
catttgcttccttgccaactggtttttaagtaaatacagaagattctgtgcaaggacat |
44064981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University