View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20722_high_3 (Length: 732)
Name: NF20722_high_3
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 665; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 14 - 719
Target Start/End: Original strand, 43553588 - 43554293
Alignment:
| Q |
14 |
acaattgtcataaaaccataaataatccttagctattgaacaaaataaaattgagaaagaatatgtattaaatccatatactactaacagtatttgatgc |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553588 |
acaattatcataaaaccataaataatccttagctattgaacaaaataaaattgagaaagaatatgtattaaatccatatactactaacagtatttgatgc |
43553687 |
T |
|
| Q |
114 |
ctgatatattgtttacttgtattatcatgnnnnnnngtaaacattcgaaaaatcttaattattatttttcgttatttacatcattcaaatcggtcaaatt |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553688 |
ctgatatattgtttacttgcattatcatgaaaaaaagtaaacattcgaaaaatcttaattattatttttcgttatttacatcattcaaatcggtcaaatt |
43553787 |
T |
|
| Q |
214 |
acaacagttaccgacttttcagtaagaaaatgcaatatggatataaataaactaaaattatctctccgtatgttgcacaggttaaaacactagttaaata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553788 |
acaacagttaccgacttttcagtaagaaaatgcaacacgtatataaataaactaaaattatctctccgtatgttgcacaggttaaaacactagttaaata |
43553887 |
T |
|
| Q |
314 |
tatttagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553888 |
tatttagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggttt |
43553987 |
T |
|
| Q |
414 |
gtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553988 |
gtaccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaa |
43554087 |
T |
|
| Q |
514 |
atgatgcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaa |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43554088 |
atgatgcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaa |
43554187 |
T |
|
| Q |
614 |
agcaacatttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcact |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43554188 |
agcaacatttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcact |
43554287 |
T |
|
| Q |
714 |
tgagaa |
719 |
Q |
| |
|
|||||| |
|
|
| T |
43554288 |
tgagaa |
43554293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 152 - 716
Target Start/End: Original strand, 43549726 - 43550289
Alignment:
| Q |
152 |
aaacattcgaaaaatcttaattattatttttcgttatttacatcattcaaatcggtcaaattacaacagttaccgacttttcagtaagaaaatgcaatat |
251 |
Q |
| |
|
||||||| |||||||||||| | ||| ||||| |||||| |||||| |||| |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
43549726 |
aaacattagaaaaatcttaaatgttacttttcaatatttaaatcatttcaatctctcaaattacaacagttact-acttttcaataagaaaatgcaatat |
43549824 |
T |
|
| Q |
252 |
ggatataaataaactaaaattatctctccgtatgttgcacaggttaaaacactagttaaatatatttagaactcccatcaatttctcaccttatggcgac |
351 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||||||||| |||||||||||||||||||||| ||| ||| ||| || |||||||||||||||||| |
|
|
| T |
43549825 |
ggatataattaaactaaaattatttccccgtacgttgcacagaataaaacactagttaaatatattcagagctcacataaacttctcaccttatggcgac |
43549924 |
T |
|
| Q |
352 |
cgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtaccattggaaacttgcaccaagaaaaccaaagcatc |
451 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| ||||||| | ||||| ||| |||||||||| || |||| |||||||||||| ||||| || |
|
|
| T |
43549925 |
cgcctgaaactgcgagatgtaagacagtgttgccatatttatcttgtctgtgcactagatttgtaccataggcaactctcaccaagaaaactaaagcgtc |
43550024 |
T |
|
| Q |
452 |
atagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgatgcagcacttcctgacacaaaatcatcgaggatc |
551 |
Q |
| |
|
||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| |||| ||||| | |||| |||| || |||||||| || ||| | |
|
|
| T |
43550025 |
ataacatccatatctcacagctagatgaagtactgtctcttcttctcttgtgggatagtgaaagtacgcagtacttactaccacaaaatagtcaagggtt |
43550124 |
T |
|
| Q |
552 |
gagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaacatttgaatcgcgttttagtaggatccatacag |
651 |
Q |
| |
|
|||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
43550125 |
gagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagcaagttttgaatcgcgacttagtaggatccatacaa |
43550224 |
T |
|
| Q |
652 |
tctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttga |
716 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
43550225 |
tctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttga |
43550289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University