View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20722_high_34 (Length: 258)

Name: NF20722_high_34
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20722_high_34
NF20722_high_34
[»] chr6 (9 HSPs)
chr6 (78-258)||(2592803-2592983)
chr6 (84-258)||(2624321-2624494)
chr6 (1-84)||(2593207-2593290)
chr6 (158-250)||(2624631-2624723)
chr6 (11-82)||(2635192-2635263)
chr6 (79-258)||(2671666-2671841)
chr6 (121-258)||(2568334-2568469)
chr6 (13-81)||(2671443-2671511)
chr6 (103-149)||(2634879-2634925)
[»] scaffold0103 (2 HSPs)
scaffold0103 (11-82)||(4746-4817)
scaffold0103 (103-149)||(5084-5130)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 2592983 - 2592803
Alignment:
Q  78 tagaccaaagattatacatagtagcaaaaggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctac 177  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2592983 tagaccaaagaatatacatagtagcaaaaggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctac 2592884  T
Q  178 aattttgatgattatagaaatgaaaattttaggaagctaagttgaaaccaatttccttgaacctcttctcaattttctttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2592883 aattttgatgattatagaaatgaaaattttaggaagctaagttgaaaccaatttccttgaacctcttctcagttttctttt 2592803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 2624494 - 2624321
Alignment:
Q  84 aaagattatacatagtagc-aaaaggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaattt 182  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||| |||| ||||  ||||||||||||||||| |||||||||||||    
T  2624494 aaagattatacatagtagagaaaaggatttaactatattacaatataaacatatagtaattagcatataaattgtgttatgttagaaaaacctacaattt 2624395  T
Q  183 tgatgattatagaaatgaaaattttaggaagctaagttgaaaccaatttccttgaacctcttctcaattttctttt 258  Q
    |||||||| ||||||||  | |||| |||||||||| |||||||||||||  ||||| ||||||||||||||||||    
T  2624394 tgatgattgtagaaatg--attttttggaagctaaggtgaaaccaatttctctgaacttcttctcaattttctttt 2624321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2593207 - 2593290
Alignment:
Q  1 actcctatgatatataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagacca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593207 actcctatgatatataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagacca 2593290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 2624723 - 2624631
Alignment:
Q  158 gttatgttagacaaacctacaattttgatgattatagaaatgaaaattttaggaagctaagttgaaaccaatttccttgaacctcttctcaat 250  Q
    ||||||||||| || ||||||||||| || ||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2624723 gttatgttagaaaagcctacaattttcataattgtagaaatgaaatttttaggaagctaaggtgaaaccaatttccctgaacctcttctcaat 2624631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 2635192 - 2635263
Alignment:
Q  11 tatataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagac 82  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  2635192 tatataactaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagac 2635263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 2671666 - 2671841
Alignment:
Q  79 agaccaaagattatacatagtagcaaaaggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctaca 178  Q
    |||| ||||| ||||||||||   |||| ||| |||||| ||||||||| |||| ||     |||| ||||||||||||| |||||| || ||||| |||    
T  2671666 agacaaaagactatacatagtcaaaaaaagatgtaactatattacaatagaaccgta-----attaacataggaattgtgctatgtttgaaaaaccaaca 2671760  T
Q  179 attttgatgattatagaaatgaaaattttaggaagct-aagttgaaaccaatttccttgaacctcttctcaattttctttt 258  Q
    |||||||||||| || | ||||||| ||| ||||||| |||  | || |||| ||||| ||||||||||||||||||||||    
T  2671761 attttgatgattgtacagatgaaaacttttggaagctaaaggagcaaacaatctccttaaacctcttctcaattttctttt 2671841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 2568334 - 2568469
Alignment:
Q  121 tacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaattttgatgattatagaaatgaaaattttaggaagctaagtt 220  Q
    ||||| ||||| ||||||| |||| |||||||||||| ||||||| || ||||| ||||||||||||||| || |||||||| ||||  |||||||||      
T  2568334 tacaaaataactatatagtaattaacataggaattgtcttatgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttagaagctaaggg 2568433  T
Q  221 gaaaccaatttccttgaacctcttctcaattttctttt 258  Q
      ||||||||||| | ||||||  ||||||||| ||||    
T  2568434 acaaccaatttccgtaaacctc--ctcaattttatttt 2568469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 2671511 - 2671443
Alignment:
Q  13 tataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttaga 81  Q
    |||||||||| || |||||||| | |||||||||||||||||||||||  |||| ||||||||||||||    
T  2671511 tataaccaagatgttatcaattctatttcaaatgattttcatacctcactctttggaaaattagttaga 2671443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 2634925 - 2634879
Alignment:
Q  103 aaaaggatttaactaaattacaatataaccatatagttattatcata 149  Q
    ||||||||||||||| ||||||||||||| ||||||| |||| ||||    
T  2634925 aaaaggatttaactatattacaatataacgatatagtaattagcata 2634879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 4817 - 4746
Alignment:
Q  11 tatataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagac 82  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  4817 tatataactaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagac 4746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 5084 - 5130
Alignment:
Q  103 aaaaggatttaactaaattacaatataaccatatagttattatcata 149  Q
    ||||||||||||||| ||||||||||||| ||||||| |||| ||||    
T  5084 aaaaggatttaactatattacaatataacgatatagtaattagcata 5130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University