View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_high_37 (Length: 241)
Name: NF20722_high_37
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 52899359 - 52899145
Alignment:
| Q |
10 |
aagaatatttaaataacaaaagggtctaaagtctaaaccacataatagaagagtcacaacaaataattaatccataaaaccaattaatttacctagaggg |
109 |
Q |
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| T |
52899359 |
aagaaaattcaaataacaaaagggtctaaagtctaaaccacacaatagaagagtcacaacaaataattaatccataaaaccaattaatttacctagaggg |
52899260 |
T |
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| Q |
110 |
cttgagtcatctttgaagttggaaattcggagaaaccgtactctgtgtgagtagtttacaagatcttctttgaagctaagatcaccctccctcaatatcc |
209 |
Q |
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| T |
52899259 |
cttgagtcatctttgaagttggaaattcggagaaaccgtactctgtgtgagtagtttacaagatcttctttgaagctaagatcaccctctctcaatatcc |
52899160 |
T |
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| Q |
210 |
tatggaccacaatca |
224 |
Q |
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| T |
52899159 |
tatggaccacaatca |
52899145 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 16482642 - 16482691
Alignment:
| Q |
94 |
taatttacctagagggcttgagtcatctttgaagttggaaattcggagaa |
143 |
Q |
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| T |
16482642 |
taatttacctagagggcttgagtcatctttaaaattggatatttggagaa |
16482691 |
T |
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