View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_high_43 (Length: 211)
Name: NF20722_high_43
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 2343540 - 2343375
Alignment:
| Q |
19 |
aaaattgaaattttatttttctttattatttaccttctagaatggatgaatataggaggtgtaaatagaaaatgtagaaaagttagaaataaaatacctc |
118 |
Q |
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| T |
2343540 |
aaaattgaaattttatttttctttattatttaccttctagaatggatgaatataggaggtgtaaatagaaaatgtagaaaagttagaaataaaatacctc |
2343441 |
T |
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| Q |
119 |
tttagtgtaaaccatgaagttgtgggaatcatggtgggaatcatggtgatggtggaagacattatggatggttccatg |
196 |
Q |
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| T |
2343440 |
tttggtgtaaaccatgaagttgtgggaatcat------------ggtgatggtggaagacattatggatggttccatg |
2343375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 2336086 - 2335991
Alignment:
| Q |
60 |
atggatgaatataggaggtgtaaatagaaaatgtagaaaagttagaaataaaatacctctttagtgtaaaccatgaagttgtgggaatcatggtgg |
155 |
Q |
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| T |
2336086 |
atggatggatataggaggtgtaaatagaaaatggacaaatgttagttatacaatacctttttggtgtaaaccatgaagttgtgggaataatggtgg |
2335991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 2312866 - 2312825
Alignment:
| Q |
111 |
aatacctctttagtgtaaaccatgaagttgtgggaatcatgg |
152 |
Q |
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| T |
2312866 |
aatacatctttggtgtaaaccatgaagttgtgggaatcatgg |
2312825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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