View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20722_high_8 (Length: 495)
Name: NF20722_high_8
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 6628015 - 6627838
Alignment:
| Q |
37 |
gacccaccgtacatacaatagcctaaatcatattacatatatttatactaaacacacctccacaattttgttcgtttggtgaggggnnnnnnnnn--gat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6628015 |
gacccaccgtacatacaatagcctaaatcatattacatatatttttactaaacacacctccacaattttgttcgtttggtgagggaaaaaaaaaaaagat |
6627916 |
T |
|
| Q |
135 |
agaaaaagaagtttgcacatctggcgggaacggtagagcagcgcatttggcgttgccaaaccgtgtgatcgtttacac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6627915 |
agaaaaagaagtttgcacatctggcgggaacggtagagcagcgcatttggcgttgccaaaccgtgtgatcgtttacac |
6627838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 362 - 473
Target Start/End: Complemental strand, 6627688 - 6627577
Alignment:
| Q |
362 |
caatgacaatgttttacaaataatgaatcattcttgttctaatcataattattgtaatgtaaattattgcttgcattcgccatgcgttggttgccaaccc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6627688 |
caatgacaatgttttacaaataatgaatcattcttgttctaatcataattattgtaatgtaaattattgcttgcattcgccatgcgttggttgccaaccc |
6627589 |
T |
|
| Q |
462 |
taattttcaatc |
473 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6627588 |
taattttcaatc |
6627577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University