View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_10 (Length: 444)
Name: NF20722_low_10
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 28335404 - 28334970
Alignment:
| Q |
17 |
cacaacccacaaaaatatccaaatgtggtgaagtcatggcgagattttgtaggccatgatgttttgaccgtaaaattaactctataaatacctctttgta |
116 |
Q |
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| T |
28335404 |
cacaacccacaaaaatatccaaatgaggtgaagtcatggcgagattttgtaggccatgacgttttgaccgtaaaattaactctataaatacctctttgta |
28335305 |
T |
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| Q |
117 |
catttcatttacgacacaaacaatcaatcaaattagtctatcttcgtagatttaatatttatctttttgttttatctttacttatgcaattgttagtatt |
216 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28335304 |
catttcatttacgacacaaacaatcaatcatattaatctatcttcgtagatttaatatttatctttttgttttatctttacttatgcaattgttagtatt |
28335205 |
T |
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| Q |
217 |
ttagcacacaaaaaactcaacatcgtacataacattctttagaagagttaaggaaatcacaactgaggg-------acaaagccctttctacgtgcaatc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
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| T |
28335204 |
ttagcacacaaaaaactcaacatcgtacataacattctttagaagagttaaggaaatcacaaccgaagggcaaactgcaaagccctttctacgtgcaatc |
28335105 |
T |
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| Q |
310 |
atttcaagtgtaaaagatatcacaattgagtactatttacttattctcctactaactttcaagttcgacatgctcttgtcaatgaggtatgtaatacgac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28335104 |
atttcaagtgtaaaagatatcacaattgagtactatttacttattctcctactaactttcaagttcgacatgctcttgtcaatgaggtatgtaatacgac |
28335005 |
T |
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| Q |
410 |
attcatagccctttgactagtgtctccgacattct |
444 |
Q |
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| T |
28335004 |
attcatagccctttgactagtgtctccgacattct |
28334970 |
T |
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