View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_11 (Length: 444)
Name: NF20722_low_11
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 28335404 - 28335046
Alignment:
| Q |
17 |
cacaacccacaaaaatatccaaatgtggtgaagtcatggcgagattttgtaggccatgatgttttgaccgtaaaattaactctataaatacctctttgta |
116 |
Q |
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| T |
28335404 |
cacaacccacaaaaatatccaaatgaggtgaagtcatggcgagattttgtaggccatgacgttttgaccgtaaaattaactctataaatacctctttgta |
28335305 |
T |
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| Q |
117 |
catttcatttacgacacaaacaatcaatcaaattagtctatcttcgtagatttaatatttatctttttgttttatctttacttatgcaattgttagtatt |
216 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28335304 |
catttcatttacgacacaaacaatcaatcatattaatctatcttcgtagatttaatatttatctttttgttttatctttacttatgcaattgttagtatt |
28335205 |
T |
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| Q |
217 |
ttagcacacaaaaaactcaacatcgtacataacattctttagaagagttaaggaaatcacaactgaggg-------acaaagccctttctacgtgcaatc |
309 |
Q |
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| T |
28335204 |
ttagcacacaaaaaactcaacatcgtacataacattctttagaagagttaaggaaatcacaaccgaagggcaaactgcaaagccctttctacgtgcaatc |
28335105 |
T |
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| Q |
310 |
atttcaagtgtaaaagatatcacaattgagtactatttacttattctcctactaacttt |
368 |
Q |
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| T |
28335104 |
atttcaagtgtaaaagatatcacaattgagtactatttacttattctcctactaacttt |
28335046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 28334912 - 28334994
Alignment:
| Q |
363 |
aactttgaagctcatcccaccaaagcatttat-cagggcaagggcacagttggactcaagaatgtcggagacactagtcaaag |
444 |
Q |
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|||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334912 |
aactttgaagctcatcccaccagagcatttgttcagggcaagggcacagttggactcaagaatgtcggagacactagtcaaag |
28334994 |
T |
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