View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_15 (Length: 383)
Name: NF20722_low_15
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_15 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 2593031 - 2593395
Alignment:
| Q |
1 |
ataagcggagttagggagatgacacctattgaagtagttttgtttaacctcttatttaaaaattgtattaacattgttaatgtcaattttgatttaatgc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2593031 |
ataagcggagttagggagatgacacttattgaagtagtcttgtttaacctcttatttaaaaattgtattaatattgttaatgtcaattttgatttaatgc |
2593130 |
T |
|
| Q |
101 |
atatgtacttgattacctagcgatgtagaaaacttgaagtacaacatttcctaacaaattgatgtaannnnnnnnnactcctatgatatataaccaagtt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
2593131 |
atatgtacttgattccctagcgatgtagaaaacttgaagtagaacatttcctaacaacttgatgtaaaaatttcttactcctatgatatataaccaagtt |
2593230 |
T |
|
| Q |
201 |
ggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatgta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2593231 |
ggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatata |
2593330 |
T |
|
| Q |
301 |
cactcatgtgaaaccaagaaagagttgtatactaaaagtacttaattacgggattggactcttat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2593331 |
cactcatgtgaaaccaagaaagagttgtatactaaaagtacttaattatgggattggactcttat |
2593395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2635005 - 2635332
Alignment:
| Q |
1 |
ataagcggagttagggagatgacacctattgaagtagttttgtttaacctcttatttaaaaattgtattaacattgttaatgtcaattttgatttaatgc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
2635005 |
ataagcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgc |
2635104 |
T |
|
| Q |
101 |
atatgtacttgattacctagcgatgtagaaaacttgaagtacaacatttcctaacaaattgatgtaannnnnnnnnactcctatga--tatataaccaag |
198 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||| || | |||| ||||||||| |||||||| ||| |
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| T |
2635105 |
atatgtacttgattacctatcgatgtagaaaactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatgatgtatataactaag |
2635203 |
T |
|
| Q |
199 |
ttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatg |
298 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||| || |||| |
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| T |
2635204 |
tttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattataatg |
2635303 |
T |
|
| Q |
299 |
tacactcatgtgaaaccaagaaagagttg |
327 |
Q |
| |
|
||| |||||| ||||| |||||| ||||| |
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| T |
2635304 |
tactctcatgcgaaactaagaaatagttg |
2635332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 2568216 - 2568105
Alignment:
| Q |
47 |
acctcttatttaaaaattgtattaacattgttaatgtcaattttgatttaatgcatatgtacttgattacctagcgatgtagaa-aacttgaagtacaac |
145 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||||| ||||||||| |||||||||| ||||| ||||| | ||||||||| ||||||||||| || |
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| T |
2568216 |
acctcttatttgagaattgtattaatattgttaatgtcgattttgattaaatgcatatgcacttgtttaccaatggatgtagaacaacttgaagtagaat |
2568117 |
T |
|
| Q |
146 |
atttcctaacaa |
157 |
Q |
| |
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|||||||||||| |
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| T |
2568116 |
atttcctaacaa |
2568105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 323
Target Start/End: Complemental strand, 2671511 - 2671377
Alignment:
| Q |
189 |
tataaccaagttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaa |
288 |
Q |
| |
|
|||||||||| || |||||||| | ||||||||||||||||||||||| |||| |||||||||||||| | |||| || ||| ||||| | ||||| |
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| T |
2671511 |
tataaccaagatgttatcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatctctctctaa |
2671412 |
T |
|
| Q |
289 |
caatacaatgtacactcatgtgaaaccaagaaaga |
323 |
Q |
| |
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| | |||||||||||||||||||| |||||||| |
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| T |
2671411 |
tatgataatgtacactcatgtgaaactaagaaaga |
2671377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 2624565 - 2624634
Alignment:
| Q |
7 |
ggagttagggagatgacacctattgaagtagttttgtttaacctcttatttaaaaattgtattaacattg |
76 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||| |||||||||||| ||||| |||||| |||| |
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| T |
2624565 |
ggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatttgaaaatattattaatattg |
2624634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 5004 - 4677
Alignment:
| Q |
1 |
ataagcggagttagggagatgacacctattgaagtagttttgtttaacctcttatttaaaaattgtattaacattgttaatgtcaattttgatttaatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
5004 |
ataagcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgc |
4905 |
T |
|
| Q |
101 |
atatgtacttgattacctagcgatgtagaaaacttgaagtacaacatttcctaacaaattgatgtaannnnnnnnnactcctatga--tatataaccaag |
198 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||| || | |||| ||||||||| |||||||| ||| |
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| T |
4904 |
atatgtacttgattacctatcgatgtagaaaactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatgatgtatataactaag |
4806 |
T |
|
| Q |
199 |
ttggtatcaattatgtttcaaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatg |
298 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||| || |||| |
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|
| T |
4805 |
tttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattataatg |
4706 |
T |
|
| Q |
299 |
tacactcatgtgaaaccaagaaagagttg |
327 |
Q |
| |
|
||| |||||| ||||| |||||| ||||| |
|
|
| T |
4705 |
tactctcatgcgaaactaagaaatagttg |
4677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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