View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_16 (Length: 382)
Name: NF20722_low_16
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 109 - 366
Target Start/End: Complemental strand, 35749056 - 35748808
Alignment:
| Q |
109 |
aggctataaacatagcctcaacatacaaattggaaatgcaggattcatatttcacatttttcatatttgacttatcattattcagtttcacattgcacta |
208 |
Q |
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| T |
35749056 |
aggctataaacatagcatcaagatacaaattggaaatgaaggattcatatttcacatttttcatatttgacttatcattattcagtttcacattgcacta |
35748957 |
T |
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| Q |
209 |
actaatcatttatcaacttcatttatagcatttggggcttcacatggaatcgtttttgtgctatataatcaacttttgaacaaaatccaaacatcccgtt |
308 |
Q |
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| T |
35748956 |
actaatcatttatcaacttcatttatagcatttggggcttcacatggaatcgtttttgtgctatataatcaacttttgaacaaaatccaaac-------- |
35748865 |
T |
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| Q |
309 |
aaagcatgaaaatttacaagacaatattaataagaaatcataaagaagatcaaattaa |
366 |
Q |
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| T |
35748864 |
-aagcatgaaaatttacaagacaatattaataagaaatcataaagaagatcaaattaa |
35748808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 35749242 - 35749156
Alignment:
| Q |
13 |
aatatatttttccatacaacctcataacattgagctccgttaccgtctaagctttaatttctatacattgacaatatatacaaatta |
99 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35749242 |
aatatatttttccatacaacctcataacattaagctccgttaccgtctaagctttaatttctatacattgacaatatatagaaatta |
35749156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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