View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_17 (Length: 371)
Name: NF20722_low_17
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 32788981 - 32789323
Alignment:
| Q |
17 |
atattcaaattaaatttgtgggcatagagtatttttgtgtaccttggatggagggtatgttatggctccataattaggaaatgaagaagaagttggaaga |
116 |
Q |
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| T |
32788981 |
atattgaaattaaatttgtgtgcatagagtatttttgtgtaccttggatggagggtatgttatggctccataattaggaaatgaagaagaagttggaaga |
32789080 |
T |
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| Q |
117 |
ctaaataatgggtcttgagatgagaattgcgaccaatttccatgatcccttgatgtaccattgatattgagagaagtctcatttaccatattgtgaggtg |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32789081 |
ctaaataatgggtcttgagatgagaattgcaaccaatttccatgatcccttgatgtaccattgatattgagagaagtctcatttaccatattgtgtggtg |
32789180 |
T |
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| Q |
217 |
aacaatccttcatttgcatcaaatagtttgaactatctaaatcttcaccccttctttcagagtatagctcaactcttggtgattggtcgcttgtaatatt |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789181 |
aacaatccttcatttgcatcaaataatttgaactatctaaatcttcaccccttctttcagagtatagctcaactcttggtgattggtcgcttgtaatatt |
32789280 |
T |
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| Q |
317 |
accatattgtcctccaacttttggcacaatcactgtactcttc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789281 |
accatattgtcctccaacttttggcacaatcactgtactcttc |
32789323 |
T |
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