View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_24 (Length: 313)
Name: NF20722_low_24
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_24 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 16526763 - 16526468
Alignment:
| Q |
1 |
taatggcctttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaaatcttcattagcaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16526763 |
taatggcctttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaattcttcattagcaga |
16526664 |
T |
|
| Q |
101 |
aattttaatctacatgcttttttactacaccttagatatactattaaaaatcattctgaattttcttctttttatgatctttgattttgcagattaactt |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16526663 |
aattttaatctacatgcttttttactacacttaagatatactattaaaaatcattcagaattttcttctttttatgatctttgtttttgcagattaactt |
16526564 |
T |
|
| Q |
201 |
ggtcacaaaagcgtatggatgcttctttcctaccgggtatgatgctcagctataaaaagtcaacatttctctagtttatatgtcatttttatgttc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
16526563 |
ggtcacaaaagcgtatggatgcttctttcctaccgggtatgatgctcagctataaacagtcaacatttatctagtttatatgtcatttttatgttc |
16526468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 16518223 - 16518056
Alignment:
| Q |
1 |
taatggcctttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa----atcttcattag |
96 |
Q |
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||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
16518223 |
taatggcatttctatgacagctatgtctctattcaaagcgattggacctgctgcaggtggtacaatgtgagtagtcttcatctaattttttcttcattag |
16518124 |
T |
|
| Q |
97 |
cagaaattttaatctacatgcttttttactacaccttagatatactattaaaaatcattctgaatttt |
164 |
Q |
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| T |
16518123 |
tagaaattttaatctacatgcttttttactacacttaagatatgctattataaatgattctcaatttt |
16518056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 16568331 - 16568210
Alignment:
| Q |
23 |
atgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa-----atcttcattagcagaaattttaatctacatgc |
117 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
16568331 |
atgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtaatcttcatctaatttttttcttcattagtagaaattttaatctacatgc |
16568232 |
T |
|
| Q |
118 |
ttttttactacaccttagatat |
139 |
Q |
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||||||||||||| | |||||| |
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| T |
16568231 |
ttttttactacacttaagatat |
16568210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 16586719 - 16586607
Alignment:
| Q |
144 |
ttaaaaatcattctgaattttcttctttttatgatctttgattttgcagattaacttggtcacaaaagcgtatggatgcttctttcctaccgggtatgat |
243 |
Q |
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|||||||| ||||| ||| ||||| || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
16586719 |
ttaaaaataattctcaatgttctttttcttttgatctttgttaatacagattaacttggtcacaaaagcgtatggatgcttctttcctaccaggtttgat |
16586620 |
T |
|
| Q |
244 |
gctcagctataaa |
256 |
Q |
| |
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|||| ||||||| |
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| T |
16586619 |
cctcaactataaa |
16586607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 16587060 - 16586984
Alignment:
| Q |
9 |
tttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa |
85 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
16587060 |
tttctatgacagctatgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtactcttcctctaa |
16586984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 16518049 - 16518006
Alignment:
| Q |
188 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcct |
231 |
Q |
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| T |
16518049 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcct |
16518006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 804 - 1042
Alignment:
| Q |
23 |
atgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaaat-----cttcattagcagaaattttaatctacatgc |
117 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| | ||||||||| |||||||||||||||||||| |
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| T |
804 |
atgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtaatcttcatctaatttttttcttcattagtagaaattttaatctacatgc |
903 |
T |
|
| Q |
118 |
ttttttactacaccttagatatactattaaaaatcattctgaattttcttctttttatgatctttgattttgcagattaacttggtcacaaaagcgtatg |
217 |
Q |
| |
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||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
904 |
ttttttactacacttaagatatgctattaaaaatcattctgaattttcttctttttatgatctttgtttttgcagattaacttggtcacaaaagcgtatg |
1003 |
T |
|
| Q |
218 |
gatgcttctttcctaccgggtatgatgctcagctataaa |
256 |
Q |
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||||||||||||||||| ||||||||||| | ||||||| |
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| T |
1004 |
gatgcttctttcctacctggtatgatgcttaactataaa |
1042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 2624241 - 2624293
Alignment:
| Q |
188 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctaccgggtat |
240 |
Q |
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||||| |||||||||||||||||| | ||||||||||||||||| || ||||| |
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| T |
2624241 |
tgcagcttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
2624293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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