View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_25 (Length: 296)
Name: NF20722_low_25
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 35541688 - 35541846
Alignment:
| Q |
17 |
agatcagatcattctttcatcaactaacattgcccccatattttgtctatgtcgtagaatcacaaactacttgtagtagaagctgatggaaactacgtgc |
116 |
Q |
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| T |
35541688 |
agatcagatcattctttcatcaactaacattgcccccatattttgtctatgtcgtagaatcacaaactacttgtagtagaagctgatggaaactacgtgc |
35541787 |
T |
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| Q |
117 |
acccatttgcagttgatgacatagacatatactcaggtgaaacctactcagtactcatt |
175 |
Q |
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| T |
35541788 |
acccatttgcagttgatgacatagacatatactcaggtgaaacctactcagtactcatt |
35541846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 35541874 - 35541950
Alignment:
| Q |
203 |
tactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaactacaaaacaat |
279 |
Q |
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| T |
35541874 |
tactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaactacaaaacaat |
35541950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 35509117 - 35509213
Alignment:
| Q |
72 |
agaatcacaaactacttgtagtagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagt |
168 |
Q |
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| T |
35509117 |
agaatcacaaacttattgtagtggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagt |
35509213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 35527312 - 35527414
Alignment:
| Q |
70 |
gtagaatcacaaactacttgtagtagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagta |
169 |
Q |
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| T |
35527312 |
gtagaatcacacacttgttgtggtggaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagta |
35527411 |
T |
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| Q |
170 |
ctc |
172 |
Q |
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| T |
35527412 |
ctc |
35527414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 35509248 - 35509319
Alignment:
| Q |
203 |
tactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaactacaaa |
274 |
Q |
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| T |
35509248 |
tactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatccttaactacaaa |
35509319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 270
Target Start/End: Original strand, 35527482 - 35527512
Alignment:
| Q |
240 |
acacaccacaagccctaacaatccttaacta |
270 |
Q |
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| T |
35527482 |
acacaccacaagccctaacaatccttaacta |
35527512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 35541959 - 35541997
Alignment:
| Q |
213 |
caatcggtgttagaggtagaaaacctaacacaccacaag |
251 |
Q |
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| T |
35541959 |
caatcggtgttagaggtagaaaaccaaacacgccacaag |
35541997 |
T |
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