View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_28 (Length: 280)
Name: NF20722_low_28
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 28334642 - 28334896
Alignment:
| Q |
6 |
agtagcatagggtagatagtagtgaccaaaatatttccaccataatcgtgggatttctgaagcagctgcttgcaaccatactagttacttcaggatccca |
105 |
Q |
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| T |
28334642 |
agtagcatacggtagatagtagtgaccaaaatatttccaccataatcgtgggatttctgaagcagctgcttgcaaccatactagttacttcaggatccca |
28334741 |
T |
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| Q |
106 |
agtaatttaagagctataacacttttcatatcaagggtcaaagtagcaaataagat-nnnnnnnnnnntttactatatacataaaagaaaaaagtcaaat |
204 |
Q |
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| T |
28334742 |
agtaatttaagagctataacacttttcatatcaagggtcaaagtagcaaataagataaaaaaaaaaaaattactatatacataaaagaaaaaagtcaaat |
28334841 |
T |
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| Q |
205 |
tacctgtaacctatctaaaatatgggaagcattcctaaactgtgaaattgtcatt |
259 |
Q |
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| T |
28334842 |
tacctgtaacctatctaaaatatgggaagcattcctaaactgtgaaattgtcatt |
28334896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 46711576 - 46711688
Alignment:
| Q |
44 |
accataatcgtgggatttctgaagcagctgcttgcaaccatactagttacttcaggatcccaagtaatttaagagctataacacttttcatatcaagggt |
143 |
Q |
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| T |
46711576 |
accataattgttggacatctgaagcacctgcttgcaaccacaccagttaattcaagatctcaagtaatttaagaactataacactgtccatattaa-ggt |
46711674 |
T |
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| Q |
144 |
caaagtagcaaata |
157 |
Q |
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| T |
46711675 |
caaagtagcaaata |
46711688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 46711712 - 46711772
Alignment:
| Q |
193 |
aaaaagtcaaattacctgtaacctatctaaaatatgggaagcattcctaaactgtgaaatt |
253 |
Q |
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| T |
46711712 |
aaaatgtcaaattacctgcaacctatctaaaatatgagaagcattcctaaactgtgaaatt |
46711772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 11141637 - 11141580
Alignment:
| Q |
196 |
aagtcaaattacctgtaacctatctaaaatatgggaagcattcctaaactgtgaaatt |
253 |
Q |
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| T |
11141637 |
aagtcaaattacctgcaacctatccacaatatgggaagcattcctaaactgtgaaatt |
11141580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 11141764 - 11141679
Alignment:
| Q |
56 |
ggatttctgaagcagctgcttgcaaccatactagttacttcaggatcccaagtaatttaagagctataacacttttcatatcaagg |
141 |
Q |
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|||||| ||||||| ||||||| ||||| || |||||||||| ||||||||||||||| ||| |||||| ||| || ||||||||| |
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| T |
11141764 |
ggatttttgaagcacctgcttgtaaccacaccagttacttcaagatcccaagtaattttagaactataagactgtttatatcaagg |
11141679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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