View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20722_low_30 (Length: 278)

Name: NF20722_low_30
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20722_low_30
NF20722_low_30
[»] chr4 (4 HSPs)
chr4 (1-243)||(36076123-36076365)
chr4 (19-201)||(27111475-27111658)
chr4 (89-173)||(13522163-13522247)
chr4 (4-62)||(19355894-19355952)
[»] chr1 (1 HSPs)
chr1 (4-201)||(27759263-27759461)
[»] chr7 (3 HSPs)
chr7 (17-173)||(47691228-47691384)
chr7 (41-171)||(36258641-36258770)
chr7 (89-173)||(9651138-9651222)
[»] chr2 (4 HSPs)
chr2 (16-200)||(15671490-15671675)
chr2 (32-173)||(16070715-16070856)
chr2 (55-173)||(37214960-37215078)
chr2 (74-201)||(25473020-25473148)
[»] chr6 (1 HSPs)
chr6 (19-115)||(2478252-2478348)
[»] chr3 (2 HSPs)
chr3 (4-49)||(43755470-43755515)
chr3 (142-201)||(21355357-21355417)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36076123 - 36076365
Alignment:
Q  1 atatattatgtctctaatttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatctttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36076123 atatattatgtctctaatttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatctttta 36076222  T
Q  101 ttcgataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatgattgtggcttaactcgttctcttgttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36076223 ttcgataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatgattgtggcttaacccgttctcttgttt 36076322  T
Q  201 gggtattgactaaaatctctagctagagatctctttccttttg 243  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  36076323 gggtattgactaacatctctagctagagatctccttccttttg 36076365  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 27111475 - 27111658
Alignment:
Q  19 ttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaagttt 118  Q
    ||||||||||||| |||  || ||||| ||| | |  ||||||||||| ||||| |||||  ||||||||||| |||||||||| |||||||||||| ||    
T  27111475 ttggttttcttgtatttgagtaatatgaaaagaacgaaataataaaatctttagtcaaaagaaagactttattaatcttttattggataaagtcaagctt 27111574  T
Q  119 ctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatgatt-gtggcttaactcgttctcttgtttg 201  Q
    ||||||||    || || | |  ||||||| ||||||||| ||||| |||||||| || |||||||||||| || | |||||||    
T  27111575 ctatcctatttacgactgagggcaaaatactttaatttagtttttggttatcatggttggtggcttaactccttattttgtttg 27111658  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 13522163 - 13522247
Alignment:
Q  89 attcatcttttattcgataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatg 173  Q
    ||||||| |||||| |||||||||| ||| ||||||||||||||||  |||   ||||| ||||||| |  ||||||||||||||    
T  13522163 attcatcatttattagataaagtcatgttactatcctaccggcggccgaaggctaaataagttaattcaaattttgattatcatg 13522247  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 19355894 - 19355952
Alignment:
Q  4 tattatgtctctaatttggttttcttgtgtttaggtgatatggaaatagcagaataata 62  Q
    |||||||||| ||||||||||||| |||||||  || ||||||||| |||| |||||||    
T  19355894 tattatgtctgtaatttggttttcatgtgttttagtaatatggaaagagcaaaataata 19355952  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 27759461 - 27759263
Alignment:
Q  4 tattatgtctctaatttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattc 103  Q
    |||||||| | ||||||| ||||| ||| ||| ||| ||||||| | ||| ||||| |||||||||||| ||||| |||||||||||||||| ||||||     
T  27759461 tattatgtatgtaatttgattttcatgttttttggtaatatggatagagcggaatactaaaatatttagccaaaaggaagactttattcatcatttattg 27759362  T
Q  104 gataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatgattg-tggcttaactcgttctcttgtttg 201  Q
    |||||||||||||| |||||||||||| ||   |||  |||||| |||||||||| ||||| || ||||| ||| ||||||| | | || |||||||||    
T  27759361 gataaagtcaagttactatcctaccggtggtcgaaggcaaaatatgttaatttagtttttggttctcatggttgatggcttagccccttatcttgtttg 27759263  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 47691228 - 47691384
Alignment:
Q  17 atttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaagt 116  Q
    ||||||||||||||||| |  || || |||||| || ||||||||| ||||||||| ||||| ||||||| |||||||| | |||| |||||||||||||    
T  47691228 atttggttttcttgtgtatgagtaatttggaaagagtagaataatataatatttagccaaaaggaagactctattcatcatctattggataaagtcaagt 47691327  T
Q  117 ttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatg 173  Q
    |  ||||| |  |  || | |||  |||||||||||||||||||||  |||||||||    
T  47691328 tgttatcccattgatggatgaaggcaaaatacgttaatttagctttcaattatcatg 47691384  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 36258641 - 36258770
Alignment:
Q  41 atatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaagtttctatcctaccggcggctaaaga 140  Q
    ||||||| |||||||||||| | |  |||||| ||||| ||||||| |||||||| |||||| |||||||| ||  ||  ||||||  ||  |||||||     
T  36258641 atatggatatagcagaataa-ataccatttagccaaaaggaagactctattcatcatttattggataaagttaacatttcatcctattggttgctaaagg 36258739  T
Q  141 taaaatacgttaatttagcttttgattatca 171  Q
     ||||||| ||||||||||||||| ||||||    
T  36258740 caaaatacattaatttagcttttggttatca 36258770  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 9651138 - 9651222
Alignment:
Q  89 attcatcttttattcgataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatg 173  Q
    ||||||| |||||| |||||||||| ||| ||||||||||||||||  |||   ||||| ||||||| |  ||||||||||||||    
T  9651138 attcatcatttattagataaagtcatgttactatcctaccggcggccgaaggctaaataagttaattcaaattttgattatcatg 9651222  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 15671490 - 15671675
Alignment:
Q  16 aatttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaag 115  Q
    |||||||||||||||||| |  || || |||||| |||  |||||||  || ||||  |||||  | ||||||||||||  | || | |||||||| ||     
T  15671490 aatttggttttcttgtgtctcagtaatttggaaagagcgtaataatatgatttttaaccaaaagcaggactttattcataatctaatggataaagttaat 15671589  T
Q  116 tttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatgatt-gtggcttaactcgttctcttgttt 200  Q
     |||||||||||||| |||| |||||||||||| |||||| |||||||| ||||  ||||| |||||||| ||||||||| |||||    
T  15671590 cttctatcctaccggtggctgaagataaaatacattaattgagcttttggttattctgattggtggcttagctcgttctcatgttt 15671675  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 16070715 - 16070856
Alignment:
Q  32 gtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaagtttctatcctaccggc 131  Q
    |||||||| ||||||||| ||| ||||| || |||||||||  ||||  |||||| |||||||| |||||| |||||||||||| | ||||| ||  |      
T  16070715 gtttaggtaatatggaaagagcggaatactagaatatttagttaaaagaaagactctattcatcatttattggataaagtcaagctactatcttattgat 16070814  T
Q  132 ggctaaagataaaatacgttaatttagcttttgattatcatg 173  Q
    |||| |||  ||||||||||| ||| ||||||| ||||||||    
T  16070815 ggctgaaggcaaaatacgttagttttgcttttggttatcatg 16070856  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 37214960 - 37215078
Alignment:
Q  55 gaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaat 154  Q
    |||||||| |||| |||| ||||| |||| || |||||||| | | || |||||| ||||||| || |||||  || |||| |||  |||||| ||||||    
T  37214960 gaataatataatacttagccaaaaggaagtctctattcatcatattttagataaattcaagttactttcctattggtggctgaaggcaaaatatgttaat 37215059  T
Q  155 ttagcttttgattatcatg 173  Q
    |||||||| | ||||||||    
T  37215060 ttagctttcggttatcatg 37215078  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 25473148 - 25473020
Alignment:
Q  74 caaaaagaagactttattcatcttttattcgataaagtcaagtttctatcctaccggcggctaaagataaaatacgttaatttagcttttgattatcatg 173  Q
    ||||| || |||| ||||||| || || | |||||||||||| |||| |||||| || || | ||   ||||||| | |||||| ||| || ||||||||    
T  25473148 caaaaggaggactctattcatattctagtggataaagtcaagcttctttcctactggtggttgaaagcaaaatacatcaatttaacttatggttatcatg 25473049  T
Q  174 att-gtggcttaactcgttctcttgtttg 201  Q
    ||| |||||||||| ||||||| ||||||    
T  25473048 attggtggcttaacccgttctcatgtttg 25473020  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 2478348 - 2478252
Alignment:
Q  19 ttggttttcttgtgtttaggtgatatggaaatagcagaataataaaatatttaggcaaaaagaagactttattcatcttttattcgataaagtcaag 115  Q
    ||||||||||||| |||  || ||||| ||| | |  ||||||||||| ||||| |||||  ||||||||||| |||||||||| ||||||||||||    
T  2478348 ttggttttcttgtatttgagtaatatgaaaagaacgaaataataaaatctttagtcaaaagaaagactttattaatcttttattggataaagtcaag 2478252  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 43755470 - 43755515
Alignment:
Q  4 tattatgtctctaatttggttttcttgtgtttaggtgatatggaaa 49  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||||    
T  43755470 tattatgtctaaaatttggttttcatgtgtttaggtaatatggaaa 43755515  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 21355357 - 21355417
Alignment:
Q  142 aaaatacgttaatttagcttttgattatcatgatt-gtggcttaactcgttctcttgtttg 201  Q
    |||||| |||||||||||||||| |||||||| || |||||||| ||| ||||||| ||||    
T  21355357 aaaatatgttaatttagcttttggttatcatggttggtggcttagctctttctcttatttg 21355417  T

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