View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_31 (Length: 270)
Name: NF20722_low_31
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 10182485 - 10182725
Alignment:
| Q |
12 |
gaatatctcatggttcattgacactatactaaatttttattagcaatagcaacctgtgatgttgcaatgatgtttgtgacaatatatacatttttcaatt |
111 |
Q |
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| T |
10182485 |
gaatatctcatggttcattgacactatactaaatttttattagcaatagcaacctgtgatgttgcaatgatgtttgtgataatatatacatttttcaatt |
10182584 |
T |
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| Q |
112 |
gaatggcaccagttattccaataaactcaaaagtgagatttagaaattgcattatgcttttctttgataaatcgattcaaagaaaatcgtacataaaact |
211 |
Q |
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| T |
10182585 |
gaatggcaccagttattccaataaactcaaaagtgagatttagaaattgcattatgcttttctttgataaatcgattcaaagaaaatcgtacataaaact |
10182684 |
T |
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| Q |
212 |
ttttaccgcacattcaagatacaaatgaattgaggtcaaat |
252 |
Q |
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| T |
10182685 |
ttttaccgcacattcaagatacaaatgaattgaggtcaaat |
10182725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 10162042 - 10162089
Alignment:
| Q |
111 |
tgaatggcaccagttattccaataaactcaaaagtgagatttagaaat |
158 |
Q |
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| T |
10162042 |
tgaatggcaccggttattccaatatactcaaaagtgagatttataaat |
10162089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 19473085 - 19473230
Alignment:
| Q |
12 |
gaatatctcatggttcattgacactatact-aaatttttattagcaatagcaacctgtgatgttgcaatgatgtttgtgacaatatatacatttttcaat |
110 |
Q |
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| T |
19473085 |
gaatatctcatggttcattgacagtacactcaaacttttatcagca------acctgtgatgttgcaatgaagtcagcgacaatatataaattttcagaa |
19473178 |
T |
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| Q |
111 |
tgaatggcaccagttattccaataaactcaaaagtgagatttagaaattgcatt |
164 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
19473179 |
tgaatggcaccagttattccaataaactcaaa--tgagatttataaattgcatt |
19473230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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