View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20722_low_32 (Length: 269)

Name: NF20722_low_32
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20722_low_32
NF20722_low_32
[»] chr8 (5 HSPs)
chr8 (18-256)||(16527026-16527264)
chr8 (133-253)||(16568621-16568741)
chr8 (100-239)||(16587349-16587488)
chr8 (133-249)||(16518544-16518660)
chr8 (151-221)||(26368504-26368574)
[»] scaffold1157 (1 HSPs)
scaffold1157 (133-253)||(394-514)
[»] chr3 (1 HSPs)
chr3 (152-221)||(2609178-2609247)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 16527264 - 16527026
Alignment:
Q  18 acctattggccttggccgcatcacaggggtcagtaactattatagcagttattgaattctgaatttcattgctagctatttgaaatatgatctgtaactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16527264 acctattggccttggccgcatcacaggggtcagtaactattatagcagttattgaattctgaatttcattgctagctatttgaaatatgatctgtaactt 16527165  T
Q  118 tggttgttgcatacacagattttttctataccacttttgcaaagttaccccttcatagcaatgttatcaggcataaccttatatatagtgattagtattg 217  Q
    |||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16527164 tggttgttccatatgcagattttttctataccactattgcaaagttaccccttcatagcaatgttgtcaggcataaccttatatatagtgattagtattg 16527065  T
Q  218 cttccgtcctcaagaatattatgtctgtaagttcatctc 256  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  16527064 cttctgtcctcaagaatattatgtctgtaagttcatctc 16527026  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 16568741 - 16568621
Alignment:
Q  133 cagattttttctataccacttttgcaaagttaccccttcatagcaatgttatcaggcataaccttatatatagtgattagtattgcttccgtcctcaaga 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| |||||||||    
T  16568741 cagattttttctatgccacttttgcaaagttaccccttcatagcaatgttgtctggcataaccttatacattgtgattagtattgcttccatcctcaaga 16568642  T
Q  233 atattatgtctgtaagttcat 253  Q
    |||||||||||||||||||||    
T  16568641 atattatgtctgtaagttcat 16568621  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 16587488 - 16587349
Alignment:
Q  100 aaatatgatctgtaactttggttgttgcatacacagattttttctataccacttttgcaaagttaccccttcatagcaatgttatcaggcataaccttat 199  Q
    ||||||| | ||| ||| |||||||| | ||  |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16587488 aaatatgttatgttactatggttgtttcttatgcagattatttccataccacttttgcaaagttaccccttcatagcaatgttatcaggaataaccttat 16587389  T
Q  200 atatagtgattagtattgcttccgtcctcaagaatattat 239  Q
    | || |||||||||||||||||| |||| || ||||||||    
T  16587388 acattgtgattagtattgcttccatcctgaaaaatattat 16587349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 16518660 - 16518544
Alignment:
Q  133 cagattttttctataccacttttgcaaagttaccccttcatagcaatgttatcaggcataaccttatatatagtgattagtattgcttccgtcctcaaga 232  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| || || ||| | ||| || |||||||| |||||||||    
T  16518660 cagattttttctataccagtgttgcaaagttaccccttcatagcaatgttgtcaggcataacattgtacataatcatttgtcttgcttccatcctcaaga 16518561  T
Q  233 atattatgtctgtaagt 249  Q
    ||||| |||||||||||    
T  16518560 atattgtgtctgtaagt 16518544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 26368574 - 26368504
Alignment:
Q  151 cttttgcaaagttaccccttcatagcaatgttatcaggcataaccttatatatagtgattagtattgcttc 221  Q
    |||||||||||||||||||||||||||||| | || || || || |||||  ||||||||| |||||||||    
T  26368574 cttttgcaaagttaccccttcatagcaatgctttctggaatcacattatacctagtgattaatattgcttc 26368504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 394 - 514
Alignment:
Q  133 cagattttttctataccacttttgcaaagttaccccttcatagcaatgttatcaggcataaccttatatatagtgattagtattgcttccgtcctcaaga 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| |||||||||    
T  394 cagattttttctatgccacttttgcaaagttaccccttcatagcaatgttgtctggcataaccttatacattgtgattagtattgcttccatcctcaaga 493  T
Q  233 atattatgtctgtaagttcat 253  Q
    |||||||||||||||||||||    
T  494 atattatgtctgtaagttcat 514  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 2609178 - 2609247
Alignment:
Q  152 ttttgcaaagttaccccttcatagcaatgttatcaggcataaccttatatatagtgattagtattgcttc 221  Q
    ||||||||||||||||||||||||||||| | || || || || |||||  ||||||||| |||||||||    
T  2609178 ttttgcaaagttaccccttcatagcaatgctttctggaatcacattatacctagtgattaatattgcttc 2609247  T

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