View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_33 (Length: 268)
Name: NF20722_low_33
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 22273955 - 22273718
Alignment:
| Q |
15 |
agatgtacttaattgtgccattacattatgaaattttatgagtcaacatgtcttaatctcactcagcagtgacatgtcattaaatttgagtagcttcaca |
114 |
Q |
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|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22273955 |
agatgtacgtaactgtgtcattacattatgaaattttatgagtcaacatgtcttaatctcactcagcagtgacatgtcattaaatttgagtagcttcaca |
22273856 |
T |
|
| Q |
115 |
aaaacaatcaactagtgactaaattaaggtgaacactctcgtaccgttgaagtttgattgagtatgtactcatcattcaatgtcacgttagttttgattg |
214 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22273855 |
aaaacaatcaactagcgactaaattaaggtgaacactctcgtaccgttgaagtttgactgagtatgtactcatcattcaatgtcacgttagttttgattg |
22273756 |
T |
|
| Q |
215 |
aattttgactacgatgtacaaatatttaaccaaacttc |
252 |
Q |
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| T |
22273755 |
aattttgactacgatgtacacgtatttagccaaacttc |
22273718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 22263643 - 22263410
Alignment:
| Q |
15 |
agatgtacttaattgtgccattacattatgaaattttatgagtcaacatgtcttaatctcactcagcagtgacatgtcattaaatttgagtagcttcaca |
114 |
Q |
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||||| || |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||| |
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| T |
22263643 |
agatgcacataattgtgccattacattatgaaattttttgagtcaacatgtctcaatctcactcaggagtgatatgtcattaaatttgagtaacttcact |
22263544 |
T |
|
| Q |
115 |
aaaacaatcaact-agtgactaaattaaggtgaacactctcgtaccgttgaagtttgattgagtatgtactcatcattcaatgtcacgttagttttgatt |
213 |
Q |
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||| ||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| || |||||||||| |
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| T |
22263543 |
aaacaaatcaacgcagtgactaaattaaggtgaacactctgatacatttgaagtttgtccgagtatgtactcatcattcaatgtcatgtcagttttgatt |
22263444 |
T |
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| Q |
214 |
gaattttgactacgatgtacaaatatttaaccaa |
247 |
Q |
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| T |
22263443 |
ggattttgactatgatgtacaagtatttaaccaa |
22263410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 22267814 - 22267751
Alignment:
| Q |
90 |
gtcattaaatttgagtagcttcacaaaaacaatcaacta-gtgactaaattaaggtgaacactc |
152 |
Q |
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|||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
22267814 |
gtcattaaatctgagtagcttcacaaaaaaaatcaactaggtgacaaaattaaggtgaacactc |
22267751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 4531720 - 4531753
Alignment:
| Q |
162 |
tgaagtttgattgagtatgtactcatcattcaat |
195 |
Q |
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| T |
4531720 |
tgaagtttgattgagtatgtactcatcattcaat |
4531753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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