View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_36 (Length: 246)
Name: NF20722_low_36
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_36 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 38456562 - 38456695
Alignment:
| Q |
113 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38456562 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
38456661 |
T |
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| Q |
213 |
aacttctcatattcatatacctatagctctaccc |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38456662 |
aacttctcatattcatatacctatagctctaccc |
38456695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 38181202 - 38181334
Alignment:
| Q |
113 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38181202 |
attatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattgg |
38181300 |
T |
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| Q |
213 |
aacttctcatattcatatacctatagctctaccc |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38181301 |
aacttctcatattcatatacctatagctctaccc |
38181334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 38189929 - 38189797
Alignment:
| Q |
113 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
212 |
Q |
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| T |
38189929 |
attatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattgg |
38189831 |
T |
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| Q |
213 |
aacttctcatattcatatacctatagctctaccc |
246 |
Q |
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| T |
38189830 |
aacttctcatattcatatacctatagctctaccc |
38189797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 38208426 - 38208558
Alignment:
| Q |
113 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38208426 |
attatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattgg |
38208524 |
T |
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| Q |
213 |
aacttctcatattcatatacctatagctctaccc |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38208525 |
aacttctcatattcatatacctatagctctaccc |
38208558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 38217154 - 38217022
Alignment:
| Q |
113 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
212 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38217154 |
attatgtaattccattttcttttatatgttaaaattgtttatatgag-gtgttatatttacagttactttcatcaatttcagggttagcagcattattgg |
38217056 |
T |
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| Q |
213 |
aacttctcatattcatatacctatagctctaccc |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38217055 |
aacttctcatattcatatacctatagctctaccc |
38217022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 26033031 - 26032924
Alignment:
| Q |
113 |
attatgtaattccattttcttttatatgttaaaattgtttatatgagtgtgttaaatttacagttactttcatcaatttcaggggtagcagcattattgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||| | ||||||||||| |
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| T |
26033031 |
attatgtaattccattttcttttatatgttaaaattgtttatacgag-gtgttaaatttactgttactttcattaatttcaggg---gaagcattattgg |
26032936 |
T |
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| Q |
213 |
aacttctcatat |
224 |
Q |
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||||||| |||| |
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| T |
26032935 |
aacttcttatat |
26032924 |
T |
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