View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20722_low_4 (Length: 661)
Name: NF20722_low_4
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 13 - 642
Target Start/End: Complemental strand, 37793130 - 37792501
Alignment:
| Q |
13 |
aaaattcactcacagtctctatgaatgcatccataaccggaagttcactgccatcaaaaactgaattttcatgtgatatagtggaagcgaaattttctgt |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793130 |
aaaattcactcacagtctccatgaatgcatccataaacggaagttcactaccatcaaaaactgaattttcatgtgatatagtggaagcgaaattttctgt |
37793031 |
T |
|
| Q |
113 |
tgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37793030 |
tgttatgcaagagaatccacttgaaaatggttgtgaagatagtggactcgtaatattgggatcgatattgttctcaaaaactccttcaagtttcttggtt |
37792931 |
T |
|
| Q |
213 |
tcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaactctcactaaaattgtccatgtatgtttccataa |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37792930 |
tcttccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaattctcactaaaattctccatgtatgtttccataa |
37792831 |
T |
|
| Q |
313 |
aagaaaggtcattatcatcaagaattgcattgtccattgttatgcaagacaattcgcttgaagatggttgtggagatatttgatttgcaatattaggatc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37792830 |
aagaaaggtcattatcatcaagaattgcattgtccattgttatgcaagacaattcgcttgaagatggttgcggagatatttgatttgcaatattaggatc |
37792731 |
T |
|
| Q |
413 |
attgttgttctctaaaactccttcaaatttcttaggttcttccaatgtagggtgattatttgaatttgaatcttttgctattctcgttccacgtttagac |
512 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37792730 |
attgttgctctctaaaactacttcaaatttcttaggttcttccaatgtagggtgattatttgaatttgaatcttttgctattctcgttccacgtttcgac |
37792631 |
T |
|
| Q |
513 |
ttgatattctttacaaaacgcttcttcaaggtagtgtgccagtgattctttatctcattatcggttctccctggaaaatttgaagcaatcacggtccatc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37792630 |
ttgatattctttacaaaacgcttcttcaaggtagtgtgccagtgattctttatctcattatcggttctccctggaaaatttgaagcaatcacggtccatc |
37792531 |
T |
|
| Q |
613 |
tgcactatataaatcatttgatcatcataa |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37792530 |
tgcactatataaatcatttgatcatcataa |
37792501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 77 - 339
Target Start/End: Complemental strand, 37793534 - 37793272
Alignment:
| Q |
77 |
attttcatgtgatatagtggaagcgaaattttctgttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcg |
176 |
Q |
| |
|
||||||||||||||| ||||||| | |||||| ||||||| ||||||||||| |||| ||||||| |||||| |||||| | |||||||||| |
|
|
| T |
37793534 |
attttcatgtgatattgtggaagtaacattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatca |
37793435 |
T |
|
| Q |
177 |
atgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccaga |
276 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||| ||||||||| |||||||| | ||| || |||| |||| |||||||||||||||| ||||| |
|
|
| T |
37793434 |
atgttgtactcaaaaactccttcaattttcttggcttcttccattgtaaggtgattacgaaggaaatgtgaactgtcaatcatatatggctctgaccaga |
37793335 |
T |
|
| Q |
277 |
aactctcactaaaattgtccatgtatgtttccataaaagaaaggtcattatcatcaagaattg |
339 |
Q |
| |
|
|| ||||||| ||||| || ||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
37793334 |
aattctcactcaaattctctatgtatgcatccataaaatgaaggtcattgtcatcaagaattg |
37793272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 410 - 640
Target Start/End: Complemental strand, 37809331 - 37809094
Alignment:
| Q |
410 |
atcattgttgttctctaaaactccttcaaatttcttaggttcttccaatgtagggtgattatttgaatttgaatcttttgctattctcgttccacgttta |
509 |
Q |
| |
|
|||| ||||||||||||| | | || ||| |||||| |||| ||||| |||||||||||| ||||||||||| ||||| ||| || ||||||||||||| |
|
|
| T |
37809331 |
atcactgttgttctctaacatttctccaagtttcttgggtttttccattgtagggtgattttttgaatttgagtctttggcttttttcgttccacgtttg |
37809232 |
T |
|
| Q |
510 |
gactt-ga--tattctttacaaaacgcttcttcaaggtagtgtgccagtgattctttatctcattatcggttctccctggaaaatttgaagcaatcacgg |
606 |
Q |
| |
|
| || || |||||||||||| | ||| || | ||| |||||||||| ||||||||||| ||||| ||||||||||| ||||||| || ||||| || |
|
|
| T |
37809231 |
gtgtttgacttattctttacaagagtcttttttatggtggtgtgccagtagttctttatctcgttatctgttctccctggtaaatttgcagaaatcatgg |
37809132 |
T |
|
| Q |
607 |
tccatctgcac----tatataaatcatttgatcatcat |
640 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| |
|
|
| T |
37809131 |
tccatctgcacaattaatataaatcatttgattatcat |
37809094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 37793246 - 37793173
Alignment:
| Q |
398 |
tgcaatattaggatcattgttgttctctaaaactccttcaaatttcttaggttcttccaatgtagggtgattat |
471 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||| || | |||||||||||||||||| |||| |
|
|
| T |
37793246 |
tgcagtattaggattattgttgttctctaaaactccttcaaatttattggcttcttccaatgtagggtgcttat |
37793173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 37793229 - 37793133
Alignment:
| Q |
178 |
tgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtcca |
274 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||| ||| |||| ||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
37793229 |
tgttgttctctaaaactccttcaaatttattggcttcttccaatgtagggtgcttatatggggaataggaagtgtctatcatatatggctctgtcca |
37793133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 37809388 - 37809272
Alignment:
| Q |
116 |
tatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggtttca |
215 |
Q |
| |
|
|||||||||| || |||||| | ||||||| |||||| ||||||||||||||||| ||| |||||||||| || | | || |||||||||||| || |
|
|
| T |
37809388 |
tatgcaagaggatgcacttgtagatggttgtgaagatggtggactcgtaatattgaaatcactgttgttctctaacatttctccaagtttcttgggtttt |
37809289 |
T |
|
| Q |
216 |
tccattgtagggtgatt |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37809288 |
tccattgtagggtgatt |
37809272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 470
Target Start/End: Complemental strand, 37793508 - 37793378
Alignment:
| Q |
340 |
cattgtccattgttatgcaagacaattcgcttgaagatggttgtggagatatttgatttgcaatattaggatcattgttgttctctaaaactccttcaaa |
439 |
Q |
| |
|
|||| ||||||||||| |||| ||| | |||| |||||||||| ||||| | || | || |||| |||||| |||||| ||| ||||||||||||| |
|
|
| T |
37793508 |
cattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatcaatgttgtactcaaaaactccttcaat |
37793409 |
T |
|
| Q |
440 |
tttcttaggttcttccaatgtagggtgatta |
470 |
Q |
| |
|
|||||| | |||||||| |||| |||||||| |
|
|
| T |
37793408 |
tttcttggcttcttccattgtaaggtgatta |
37793378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 37809533 - 37809493
Alignment:
| Q |
238 |
ggacatatgaattgtctatcatatatggctctgtccagaaa |
278 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
37809533 |
ggacatataaactgtctattatatatggctctgtccagaaa |
37809493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University