View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_40 (Length: 228)
Name: NF20722_low_40
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 37698000 - 37698197
Alignment:
| Q |
13 |
gtgagatgaactaatttacttttaggaaaggtagagagtttgtacacattgatccatttgagtgaggagttacctgttgctttcaggatgctgaataaag |
112 |
Q |
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| T |
37698000 |
gtgagatgaactaatttacttttaggaaaggtagagagtttgtacacattgatccatttgagtgaggagttacctgttgctttcaggatgctgaataaag |
37698099 |
T |
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| Q |
113 |
agttacatctaacatgaaggagcgtataaaaatcacc-nnnnnnnactttctgagcagcatgttttttcttttgaaacctctgcagcatgttgtttgt |
209 |
Q |
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| T |
37698100 |
agttacatctaacatgatggagcgtataaaaatcaccttttttttactttctgagcagcatgttttttcttttgaaacctctgcagcatgttgtttgt |
37698197 |
T |
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