View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_42 (Length: 223)
Name: NF20722_low_42
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 6988904 - 6989087
Alignment:
| Q |
36 |
ccattttgaaatgcgtaaaagtgaatgactcagttttcctctgtctgaattataattatagaattgatcttattagagataatttggtgaatgcactaat |
135 |
Q |
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| T |
6988904 |
ccattttgaaatgcgtaaaagtgaatgactcagttttcctctgtctgaattataattatagaattgatcttattaaagataatttggttaatgcactaat |
6989003 |
T |
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| Q |
136 |
gtaatgtgcatgatgcaggttgagagatttgcctgcctttatacaagccgggtatctaacttgggtctgttatcttcggacaag |
219 |
Q |
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| T |
6989004 |
gtaatgtgcatgatgcaggttgagagatttgcctgcctttatacaagccgggtatctaacttgggtctgttatcttcagacaag |
6989087 |
T |
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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 35481379 - 35481321
Alignment:
| Q |
143 |
gcatgatgcaggttgagagatttgcctgcctttatacaagccgggtatctaacttgggt |
201 |
Q |
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| T |
35481379 |
gcatgatgcaggttaagagatttgcctgcctttatacaagccaagtatctaacttgggt |
35481321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 52360418 - 52360467
Alignment:
| Q |
146 |
tgatgcaggttgagagatttgcctgcctttatacaagccgggtatctaac |
195 |
Q |
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| T |
52360418 |
tgatgcaggttgagaggtttgcctgcctttataccagccaagtatctaac |
52360467 |
T |
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