View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_43 (Length: 221)
Name: NF20722_low_43
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_43 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22348530 - 22348745
Alignment:
| Q |
1 |
tgtactacacagcacatgcctatggtttttgataatgaagttgatgtggaactggtagttttgcttggctccatggtgttggctttgcttgttaaactgg |
100 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22348530 |
tgtactacacaacacatgtctatggtttttgataatgaagttgatgtggaactggttgttttgcttggctccatggtgttggctttgcttgttaaactgg |
22348629 |
T |
|
| Q |
101 |
tttacgcttacatattggtatgtccatgtctaacttgttgcatactgacattgttaaatttgatatatattgttatggtattagatttggtgcattttga |
200 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22348630 |
------cttacatattggtatgtccatgtttaacttgatgcatactgacattgttaaatttgatatatattgttatgttattagatttggtgcattttga |
22348723 |
T |
|
| Q |
201 |
cattgtcaaa-ttgatatatac |
221 |
Q |
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|||||||||| ||||||||||| |
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| T |
22348724 |
cattgtcaaatttgatatatac |
22348745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 22599101 - 22599328
Alignment:
| Q |
1 |
tgtactacacagcacatgcctatggtttttgataatgaagttgatgtggaac-tggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
99 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22599101 |
tgtactacacagcacatgcctacggtttttgataatgaagtcgatgtggaacctggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
22599200 |
T |
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| Q |
100 |
gtttacgcttacatattggtatgtccatgtct---------------aacttgttgcatactgacattgttaaatttgatatatattgttatggtattag |
184 |
Q |
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||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
22599201 |
gtttacgcttacatattggtatgtccatggctaactgatatgttataaacttgatgcatactgacattgttatatttgatatatattgttacgttattag |
22599300 |
T |
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| Q |
185 |
atttggtgcattttgacattgtcaaatt |
212 |
Q |
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|||||||||||| ||||||||||||||| |
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| T |
22599301 |
atttggtgcattatgacattgtcaaatt |
22599328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 22599386 - 22599429
Alignment:
| Q |
139 |
tgcatactgacattgttaaatttgatatatattgttatggtatt |
182 |
Q |
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|||||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
22599386 |
tgcatattgacattgttaaatttgatatatactgttatgttatt |
22599429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 50889424 - 50889197
Alignment:
| Q |
1 |
tgtactacacagcacatgcctatggtttttgataatgaagttgatgtggaac-tggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
99 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50889424 |
tgtactacacagcacatgcctatggtttttgataacgaagttgatgtggaacctggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
50889325 |
T |
|
| Q |
100 |
gtttacgcttacatattggtatgtccatgtct---------------aacttgttgcatactgacattgttaaatttgatatatattgttatggtattag |
184 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
50889324 |
gtttacgcttacatattggtatgtccatggctaactgacatgttataaacttgatgcatactgacattgttatatttgatatatactgttatgttattag |
50889225 |
T |
|
| Q |
185 |
atttggtgcattttgacattgtcaaatt |
212 |
Q |
| |
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|||||||| ||||||| ||||||||||| |
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| T |
50889224 |
atttggtgaattttgatattgtcaaatt |
50889197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 16001455 - 16001682
Alignment:
| Q |
1 |
tgtactacacagcacatgcctatggtttttgataatgaagttgatgtggaac-tggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
99 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16001455 |
tgtactacagagcacatgcctatggtttttgataacgaagttgatgtggaacctagtacttttgcttgactccatggtgttggctttgcttgttaaactg |
16001554 |
T |
|
| Q |
100 |
gtttacgcttacatattggtatgtccatgtct---------------aacttgttgcatactgacattgttaaatttgatatatattgttatggtattag |
184 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
16001555 |
gtttacgcttatatattggtatgtccatgtctaactgacatgttataaacttgatgcatactgacattgttaaatttgatatatactgttatgttattag |
16001654 |
T |
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| Q |
185 |
atttggtgcattttgacattgtcaaatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
16001655 |
atttggtgcattttgacattgtcaaatt |
16001682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 50889115 - 50889072
Alignment:
| Q |
139 |
tgcatactgacattgttaaatttgatatatattgttatggtatt |
182 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
50889115 |
tgcatattgacattgttaaatttgatatatattgttatgttatt |
50889072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6837343 - 6837116
Alignment:
| Q |
1 |
tgtactacacagcacatgcctatggtttttgataatgaagttgatgtggaac-tggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
99 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6837343 |
tgtactacacagcacatgcctacgatttttgataacgaagtcgatgtggaacctggtagttttgcttggctccatggtgttggctttgcttgttaaactg |
6837244 |
T |
|
| Q |
100 |
gtttacgcttacatattggtatgtccatgtctaac---------------ttgttgcatactgacattgttaaatttgatatatattgttatggtattag |
184 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
6837243 |
gtttacgcttacatattggtatgtccatggctaactgatatgtcataaatttgatgcatactgacattgttatatttgatatattatgttatcttattag |
6837144 |
T |
|
| Q |
185 |
atttggtgcattttgacattgtcaaatt |
212 |
Q |
| |
|
||||||||||||||||| |||||||||| |
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|
| T |
6837143 |
atttggtgcattttgacgttgtcaaatt |
6837116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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